View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1763_low_77 (Length: 280)

Name: NF1763_low_77
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1763_low_77
NF1763_low_77
[»] chr4 (1 HSPs)
chr4 (150-280)||(55074336-55074466)
[»] scaffold0182 (1 HSPs)
scaffold0182 (154-225)||(8882-8952)
[»] chr3 (6 HSPs)
chr3 (152-199)||(429458-429505)
chr3 (154-225)||(8884194-8884264)
chr3 (154-225)||(8888940-8889010)
chr3 (159-225)||(3673595-3673660)
chr3 (159-225)||(3693649-3693714)
chr3 (159-225)||(8070708-8070773)
[»] chr8 (4 HSPs)
chr8 (159-225)||(4237341-4237406)
chr8 (159-225)||(4242080-4242145)
chr8 (159-225)||(31448865-31448930)
chr8 (154-232)||(43301737-43301814)
[»] chr6 (1 HSPs)
chr6 (189-219)||(29157191-29157221)
[»] chr5 (3 HSPs)
chr5 (159-225)||(557725-557790)
chr5 (159-225)||(562497-562562)
chr5 (159-225)||(36941264-36941329)
[»] chr2 (1 HSPs)
chr2 (154-227)||(10159715-10159787)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 150 - 280
Target Start/End: Original strand, 55074336 - 55074466
Alignment:
Q  150 tccgctagagcttactccgttcccataattatgcacatgttagaggtacaccctccactatataaacacttctaatatatgtgatttatttaatgagact 249  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55074336 tccgctagagcttactccgtttccataattatgcacatgttagaggtccaccctccactatataaacacttctaatatatgtgatttatttaatgagact 55074435  T
Q  250 ttcactcttttcaattcacataacactaatt 280  Q
    |||||| ||||||||||||| ||||||||||    
T  55074436 ttcacttttttcaattcacacaacactaatt 55074466  T

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Target: scaffold0182 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 225
Target Start/End: Complemental strand, 8952 - 8882
Alignment:
Q  154 ctagagcttactccgttcccataattatgcacatgttagaggtacaccctccactatataaacacttctaat 225  Q
    |||| ||||||| ||||| ||||| |||| || | |||||||||||||| |||||||||||||||| |||||    
T  8952 ctagtgcttacttcgttcacataactatgtacctcttagaggtacaccc-ccactatataaacactactaat 8882  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 429458 - 429505
Alignment:
Q  152 cgctagagcttactccgttcccataattatgcacatgttagaggtaca 199  Q
    |||||| ||||||||||||| ||||||||||||| | |||||||||||    
T  429458 cgctagtgcttactccgttcacataattatgcacctcttagaggtaca 429505  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 8884194 - 8884264
Alignment:
Q  154 ctagagcttactccgttcccataattatgcacatgttagaggtacaccctccactatataaacacttctaat 225  Q
    |||| ||||||| ||||| ||||| |||| || | |||||||||||||| |||||||||||||||| |||||    
T  8884194 ctagtgcttacttcgttctcataactatgtacctcttagaggtacaccc-ccactatataaacactactaat 8884264  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 8888940 - 8889010
Alignment:
Q  154 ctagagcttactccgttcccataattatgcacatgttagaggtacaccctccactatataaacacttctaat 225  Q
    |||| ||||||| ||||| ||||| |||| || | |||||||||||||| |||||||||||||||| |||||    
T  8888940 ctagtgcttacttcgttcacataactatgtacctcttagaggtacaccc-ccactatataaacactactaat 8889010  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 3673595 - 3673660
Alignment:
Q  159 gcttactccgttcccataattatgcacatgttagaggtacaccctccactatataaacacttctaat 225  Q
    ||||||| ||||| ||||| |||| || | |||||||||||||| |||||||||||||||| |||||    
T  3673595 gcttacttcgttcacataactatgtacctcttagaggtacaccc-ccactatataaacactactaat 3673660  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 3693649 - 3693714
Alignment:
Q  159 gcttactccgttcccataattatgcacatgttagaggtacaccctccactatataaacacttctaat 225  Q
    ||||||| ||||| ||||| |||| || | |||||||||||||| |||||||||||||||| |||||    
T  3693649 gcttacttcgttcacataactatgtacctcttagaggtacaccc-ccactatataaacactactaat 3693714  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 8070708 - 8070773
Alignment:
Q  159 gcttactccgttcccataattatgcacatgttagaggtacaccctccactatataaacacttctaat 225  Q
    ||||||| ||||| ||||| |||| || | |||||||||||||| |||||||||||||||| |||||    
T  8070708 gcttacttcgttcacataactatgtacctcttagaggtacaccc-ccactatataaacactactaat 8070773  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 4237406 - 4237341
Alignment:
Q  159 gcttactccgttcccataattatgcacatgttagaggtacaccctccactatataaacacttctaat 225  Q
    ||||||| ||||| ||||| |||| || | |||||||||||||| |||||||||||||||| |||||    
T  4237406 gcttacttcgttcacataactatgtacctcttagaggtacaccc-ccactatataaacactactaat 4237341  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 4242145 - 4242080
Alignment:
Q  159 gcttactccgttcccataattatgcacatgttagaggtacaccctccactatataaacacttctaat 225  Q
    ||||||| ||||| ||||| |||| || | |||||||||||||| |||||||||||||||| |||||    
T  4242145 gcttacttcgttcacataactatgtacctcttagaggtacaccc-ccactatataaacactactaat 4242080  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 31448930 - 31448865
Alignment:
Q  159 gcttactccgttcccataattatgcacatgttagaggtacaccctccactatataaacacttctaat 225  Q
    ||||||| ||||| ||||| |||| || | |||||||||||||| |||||||||||||||| |||||    
T  31448930 gcttacttcgttcacataactatgtacctcttagaggtacaccc-ccactatataaacactactaat 31448865  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 43301814 - 43301737
Alignment:
Q  154 ctagagcttactccgttcccataattatgcacatgttagaggtacaccctccactatataaacacttctaatatatgtg 232  Q
    |||| ||||||| |||||  |||| |||| || | |||||||||||||| |||||||||||||||| ||||| ||||||    
T  43301814 ctagtgcttacttcgttcagataactatgtacctcttagaggtacaccc-ccactatataaacactactaatgtatgtg 43301737  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 219
Target Start/End: Complemental strand, 29157221 - 29157191
Alignment:
Q  189 ttagaggtacaccctccactatataaacact 219  Q
    |||||||||||||||||||||||||||||||    
T  29157221 ttagaggtacaccctccactatataaacact 29157191  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 557725 - 557790
Alignment:
Q  159 gcttactccgttcccataattatgcacatgttagaggtacaccctccactatataaacacttctaat 225  Q
    ||||||| ||||| ||||| |||| || | |||||||||||||| |||||||||||||||| |||||    
T  557725 gcttacttcgttcacataactatgtacctcttagaggtacaccc-ccactatataaacactactaat 557790  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 562497 - 562562
Alignment:
Q  159 gcttactccgttcccataattatgcacatgttagaggtacaccctccactatataaacacttctaat 225  Q
    ||||||| ||||| ||||| |||| || | |||||||||||||| |||||||||||||||| |||||    
T  562497 gcttacttcgttcacataactatgtacctcttagaggtacaccc-ccactatataaacactactaat 562562  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 36941329 - 36941264
Alignment:
Q  159 gcttactccgttcccataattatgcacatgttagaggtacaccctccactatataaacacttctaat 225  Q
    ||||||| ||||| ||||| |||| || | |||||||||||||| |||||||||||||||| |||||    
T  36941329 gcttacttcgttcacataactatgtacctcttagaggtacaccc-ccactatataaacactactaat 36941264  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 10159787 - 10159715
Alignment:
Q  154 ctagagcttactccgttcccataattatgcacatgttagaggtacaccctccactatataaacacttctaatat 227  Q
    |||| ||||||| ||| | ||||| |||| || | |||||||||||||| |||||||||||||||| |||||||    
T  10159787 ctagtgcttacttcgtccacataactatgtacctcttagaggtacaccc-ccactatataaacactactaatat 10159715  T

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