View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_low_78 (Length: 279)
Name: NF1763_low_78
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_low_78 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 2659575 - 2659312
Alignment:
| Q |
1 |
acattttctatgccaattcacatataatttagtgaagcaagataaatgcttcatggcaatcaaacgcaatatcaataacctcaactcaaccacattcatt |
100 |
Q |
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| T |
2659575 |
acattttctatgccaattcaaatataatttagtgaagcaagataaatgcttcatggcaatcaaacacaatatcaataacctcaactcaaccacattcatt |
2659476 |
T |
|
| Q |
101 |
ttaacaccagaaacacataagacagagatattgctagcaaataatgcatgttggatcatgtaaagaaagggtatgattttataccactgcatccaaataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2659475 |
ttaacaccagaaacacataagacagagatattgctagcaaataatgcatgttggatcatgtaaagaaagggtatgattttataccactgcatccaaataa |
2659376 |
T |
|
| Q |
201 |
tgaa-gctggattctataaagaaagggtataaatttctgctagtgcatccaaaagtaattgaat |
263 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2659375 |
tgaatgctggattctataaagaaagggtataaatttctgctagtgcatccaaaagtaattgaat |
2659312 |
T |
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