View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1763_low_79 (Length: 279)
Name: NF1763_low_79
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_low_79 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 23 - 257
Target Start/End: Complemental strand, 3949238 - 3949005
Alignment:
| Q |
23 |
actgcaactgatatatttctgaagttcgcctgcaaaaattgcaattttcaaatatcaacaaccaatgaaaaaagtaggatcttttttctaatttacacac |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
3949238 |
actgcaactgatatatttctgaagttcgcctgcaaaaattgcatttttcaaatatcaacaaccaataaaaaaagtaggattttttttctaatttacacac |
3949139 |
T |
|
| Q |
123 |
caacatgaatagttaagttttgtttattattctttcaattttacatcattgaaacatgatatatactaatttatatttgctctaagcagtgtcgtattaa |
222 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3949138 |
caacatgaatagttaagttttgtttactattctttcaattttacatcattgaaacatgatatatactaatttata-ttgctctaagcagtgtcgtattaa |
3949040 |
T |
|
| Q |
223 |
aatcatattggcttggtgcaaactatatagatttt |
257 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3949039 |
aatcatattggcttggtgcaaactatatatatttt |
3949005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University