View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_low_80 (Length: 275)
Name: NF1763_low_80
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_low_80 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 5663417 - 5663159
Alignment:
| Q |
1 |
tataacagaatagcaaagtcaacacagaagnnnnnnnn-cacatgattctcataagcagtttatagtaacatgttagcaatatcagcacagaagaaaact |
99 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5663417 |
tataacagaatagcaaagtcaacacagaagaaaaaaaaacacatgattctcataagcagattatagtaacatgttagcaatatcagcacagaagaaaact |
5663318 |
T |
|
| Q |
100 |
attataacaacagtagtataataacataaagatgaagaagttataaaccaaggcagcagaacataactactggctcgtgagtaccaaaactgacaggaaa |
199 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5663317 |
attataacaacagtagtataataacagaaagatgaagaagttataaaccaaggcagcagaacataactactggctcgtgagtaccaaaactgacaggaaa |
5663218 |
T |
|
| Q |
200 |
tggaggagaatgtgaagctaatgtgtctttaacttcttgtgagaagcgaccatggtctt |
258 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5663217 |
tggaggagaatgtgaagctaatgtgtctttaacttcttgtgagaagcgaccatggtctt |
5663159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 143 - 258
Target Start/End: Complemental strand, 52131508 - 52131398
Alignment:
| Q |
143 |
taaaccaaggcagcagaacataactactggctcgtgagtaccaaaactgacaggaaatggaggagaatgtgaagcta-atgtgtctttaacttcttgtga |
241 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||| || |||| |||| |||| ||||| ||||||||||| |
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| T |
52131508 |
taaaccaaggcagcagaacataact----tctcgtgagtacc-aaattgacaggaaatggaggataacgtgacgctacatgt-tctttgacttcttgtga |
52131415 |
T |
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| Q |
242 |
gaagcgaccatggtctt |
258 |
Q |
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| T |
52131414 |
gaagcgaccatggtctt |
52131398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 265
Target Start/End: Complemental strand, 22007875 - 22007796
Alignment:
| Q |
190 |
tgacaggaaatggaggagaat----gtgaagcta-atgtgtctttaacttcttgtgagaagcgaccatggtcttgatgatg |
265 |
Q |
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||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| |||||||||||||||||| |||| |
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| T |
22007875 |
tgacaggaaatggaggagaatcaacgtgaagctacatgt-tctttaacttcttgtgaaaagcgaccatggtcttgacgatg |
22007796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 180
Target Start/End: Original strand, 11649122 - 11649159
Alignment:
| Q |
143 |
taaaccaaggcagcagaacataactactggctcgtgag |
180 |
Q |
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||||||||||||||||||||||||| |||||||||||| |
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| T |
11649122 |
taaaccaaggcagcagaacataactgctggctcgtgag |
11649159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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