View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1763_low_81 (Length: 273)
Name: NF1763_low_81
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_low_81 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 49756516 - 49756275
Alignment:
| Q |
16 |
ataaaatagaacatagcttaattaaaattaaaatcaaggctaagatttgaaagagtttaatgaaataaactttattattaccaataggattaacattgcc |
115 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49756516 |
ataaaatagaacatagcttaattaaaactaaaatcaaggctaagatttgaaagagtttaatgaaataaactttattattaccaataggattaacattgcc |
49756417 |
T |
|
| Q |
116 |
ccagtaagtctcagcttgagggtgttgaagtggatcaccgtacacctcacttgtacttgtcagcaaaaatcgtgcacccactctctttgccaatcccaac |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49756416 |
ccagtaagtctcagcttgagggtgttgaagtggatcaccgtacacctcacttgtactagtcagcaaaaatcgtgcacccactctctttgccaatcccaac |
49756317 |
T |
|
| Q |
216 |
atgtttagtgtccccaccacattcgtcttgtgccaaacaatt |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49756316 |
atgtttagtgtccccaccacattcgtcttgtgccaaacaatt |
49756275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 246
Target Start/End: Original strand, 39567038 - 39567189
Alignment:
| Q |
95 |
accaataggattaacattgccccagtaagtctcagcttgagggtgttgaagtggatcaccgtacacctcacttgtacttgtcagcaaaaatcgtgcaccc |
194 |
Q |
| |
|
|||||| |||||||| || |||||||||||||| ||||| || | || |||||||| || ||||||||||||||||| ||||| |||| || || |
|
|
| T |
39567038 |
accaattggattaacgtttccccagtaagtctccttctgaggatgctccagaggatcaccataaacctcacttgtacttgttagcaagaatctagctcca |
39567137 |
T |
|
| Q |
195 |
actctctttgccaatcccaacatgtttagtgtccccaccacattcgtcttgt |
246 |
Q |
| |
|
||||| || |||||||| | |||||| | ||| || |||||||||||||||| |
|
|
| T |
39567138 |
actcttttcgccaatccaagcatgttcaatgttccgaccacattcgtcttgt |
39567189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University