View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1763_low_88 (Length: 249)

Name: NF1763_low_88
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1763_low_88
NF1763_low_88
[»] chr6 (20 HSPs)
chr6 (53-249)||(5065365-5065563)
chr6 (46-248)||(5253715-5253919)
chr6 (8-85)||(5065245-5065322)
chr6 (38-239)||(5177930-5178127)
chr6 (127-211)||(23127300-23127384)
chr6 (136-239)||(5279755-5279860)
chr6 (136-249)||(5346210-5346325)
chr6 (27-105)||(5178132-5178210)
chr6 (136-249)||(5126628-5126743)
chr6 (136-239)||(5688902-5689007)
chr6 (27-80)||(5688716-5688769)
chr6 (28-80)||(5279988-5280040)
chr6 (137-192)||(5398286-5398341)
chr6 (113-211)||(5098432-5098530)
chr6 (147-233)||(5100828-5100916)
chr6 (127-208)||(5124433-5124514)
chr6 (147-233)||(5135929-5136017)
chr6 (136-237)||(5242511-5242614)
chr6 (38-78)||(5279915-5279955)
chr6 (136-249)||(5427081-5427196)
[»] chr3 (4 HSPs)
chr3 (137-249)||(47985393-47985507)
chr3 (137-249)||(47994680-47994794)
chr3 (137-249)||(48003967-48004081)
chr3 (137-249)||(48013252-48013366)
[»] chr4 (2 HSPs)
chr4 (95-195)||(4132576-4132676)
chr4 (136-210)||(4122643-4122717)
[»] scaffold0294 (1 HSPs)
scaffold0294 (138-215)||(7878-7955)


Alignment Details
Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 53 - 249
Target Start/End: Original strand, 5065365 - 5065563
Alignment:
53 aaagcattcattttcatcactactactaacaataccactcttatcttgtgcatgacactcctccactttttcagcaatcagtccatcatatataagataa 152  Q
    ||||||||||||||||||||  |||||||||||| || |||||||||||||||||||||||||| | |||||||||||  || |||||||||| ||||||    
5065365 aaagcattcattttcatcaccgctactaacaataacattcttatcttgtgcatgacactcctcccccttttcagcaattggttcatcatatatgagataa 5065464  T
153 actgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtttcc--gttcaatacttgacactactctctgctcctcctca 249  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||  ||||||||||||| |||||||||||| ||||||||    
5065465 actgttgtcctcttcacaacgaaaccgttctcaaaaacaacaacaaaatccactttatttccaggttcaatacttgatactactctctgcccctcctca 5065563  T

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Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 46 - 248
Target Start/End: Complemental strand, 5253919 - 5253715
Alignment:
46 ttctgacaaagcattcattttcatcactactactaacaataccactcttatcttgtgcatgacactcctccactttttcagcaatcagtccatcatatat 145  Q
    |||| ||||| ||||||||||||| || ||||||||||||| || || |||||||| |||||||||||||| | |||||||||||  |  | ||||||||    
5253919 ttctaacaaaacattcattttcataaccactactaacaataacattcatatcttgtccatgacactcctccgccttttcagcaatgggctcgtcatatat 5253820  T
146 aagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtttcc--gttcaatacttgacactactctctgctcc 243  Q
     ||||||||||| ||||||||||||| |||||  |||||||||||||||||||| |||||||| |||||  ||||||||||| | | |||||| ||| ||    
5253819 gagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacaacaacaaactccactttatttccaggttcaatacttaataatactctttgcccc 5253720  T
244 tcctc 248  Q
    |||||    
5253719 tcctc 5253715  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 5065245 - 5065322
Alignment:
8 tgttaagtcatcaaccggcgccacttgaggagagacttttctgacaaagcattcattttcatcactactactaacaat 85  Q
    |||||||||||| || ||  |||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||    
5065245 tgttaagtcatccacaggaaccacttgaggagagacttttctgacaaagcattcattttcttcaccactacaaacaat 5065322  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 239
Target Start/End: Complemental strand, 5178127 - 5177930
Alignment:
38 agagacttttctgacaaagcattcattttcatcactactactaacaataccactcttatcttgtgcatgacactcctccactttttcagcaatcagtcca 137  Q
    |||||||| ||||||||||||||||| |||||||| |||||  |||||     ||||  ||||| | || || | ||||| ||||||  ||||  || ||    
5178127 agagacttctctgacaaagcattcatcttcatcaccactacacacaatt----tctt--cttgttcttggcattgctccattttttctccaattggttca 5178034  T
138 tcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtttc--cgttcaatacttgacactactc 235  Q
    |||||||  ||||||||||||||  ||||||||| |||||| |||||||||||||||||||  ||||||||||| |   |||| |||||||| |||||||    
5178033 tcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactactc 5177934  T

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Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 127 - 211
Target Start/End: Original strand, 23127300 - 23127384
Alignment:
127 caatcagtccatcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtt 211  Q
    |||| ||| ||||||||| |||||||||||||||  |||||||||||||||||||||||||||| |||||||  |||| ||||||    
23127300 caattagttcatcatatacaagataaactgttgtattcttcacaacgaaaccattctcaaaaacgacaacaacctccattttgtt 23127384  T

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Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 239
Target Start/End: Complemental strand, 5279860 - 5279755
Alignment:
136 catcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtttc--cgttcaatacttgacactac 233  Q
    |||||||||  ||||||||||||||  ||||||||| |||||| |||||||||||||||||||  ||||||||||| |   |||| |||||||| |||||    
5279860 catcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactac 5279761  T
234 tctctg 239  Q
    ||||||    
5279760 tctctg 5279755  T

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Target: chr6; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 136 - 249
Target Start/End: Complemental strand, 5346325 - 5346210
Alignment:
136 catcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtttcc--gttcaatacttgacactac 233  Q
    |||||||||| ||||||| || |||| ||||||||| |||||||||||||| |||||| ||||  ||||||||||| ||  |||| |||||||| || ||    
5346325 catcatatatgagataaattgctgtcttcttcacaatgaaaccattctcaataacaacgacaacctccactttgttaccaggttctatacttgatacaac 5346226  T
234 tctctgctcctcctca 249  Q
    ||||||  ||||||||    
5346225 tctctggccctcctca 5346210  T

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Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 5178210 - 5178132
Alignment:
27 gccacttgaggagagacttttctgacaaagcattcattttcatcactactactaacaataccactcttatcttgtgcat 105  Q
    ||||||||||||||||| ||||||||||  |||||||||||||||| ||||||||||||  || | | |||||||||||    
5178210 gccacttgaggagagacatttctgacaacacattcattttcatcaccactactaacaatgacattgtaatcttgtgcat 5178132  T

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Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 249
Target Start/End: Original strand, 5126628 - 5126743
Alignment:
136 catcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtttcc--gttcaatacttgacactac 233  Q
    |||||||||| |||||||| | |||| ||||||||| |||||| |||| ||||||||||||||  || |||||||| ||   ||| |||||||| |||||    
5126628 catcatatatgagataaacagctgtcttcttcacaatgaaaccgttcttaaaaacaacaacaatctcaactttgttaccagcttctatacttgatactac 5126727  T
234 tctctgctcctcctca 249  Q
    ||||| | ||||||||    
5126728 tctctccccctcctca 5126743  T

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Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 239
Target Start/End: Original strand, 5688902 - 5689007
Alignment:
136 catcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtttc--cgttcaatacttgacactac 233  Q
    |||||||||  ||||||||||||||  ||||||||| |||||| ||||||||||||  |||||  ||||||||||| |   |||| |||||||| |||||    
5688902 catcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactac 5689001  T
234 tctctg 239  Q
    ||||||    
5689002 tctctg 5689007  T

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Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 5688716 - 5688769
Alignment:
27 gccacttgaggagagacttttctgacaaagcattcattttcatcactactacta 80  Q
    ||||||||||||||||| ||||||||||  |||||||||||||||| |||||||    
5688716 gccacttgaggagagacatttctgacaacacattcattttcatcaccactacta 5688769  T

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Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 5280040 - 5279988
Alignment:
28 ccacttgaggagagacttttctgacaaagcattcattttcatcactactacta 80  Q
    |||||||||||||||| ||||||||||  |||||||||||||||| |||||||    
5280040 ccacttgaggagagacatttctgacaacacattcattttcatcaccactacta 5279988  T

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Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 5398341 - 5398286
Alignment:
137 atcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaa 192  Q
    |||||||| |||||||||||||||| ||||||||| |||| ||||||| |||||||    
5398341 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcgaaaacaa 5398286  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 211
Target Start/End: Complemental strand, 5098530 - 5098432
Alignment:
113 ctccactttttcagcaatcagtccatcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtt 211  Q
    ||||||||||||| ||||  || |||||||||  |||||||||| |||| | ||||||| |||||  ||||| ||||||||||  |  |||||||||||    
5098530 ctccactttttcaccaatttgttcatcatataccagataaactgctgtctttttcacaatgaaactgttctcgaaaacaacaatgacctccactttgtt 5098432  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 233
Target Start/End: Original strand, 5100828 - 5100916
Alignment:
147 agataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtttcc--gttcaatacttgacactac 233  Q
    |||||||||| |||| | ||||||| |||||  ||||||||||||||||| |  ||||||||||| ||  |||| |||||||| |||||    
5100828 agataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgatactac 5100916  T

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Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 5124433 - 5124514
Alignment:
127 caatcagtccatcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccacttt 208  Q
    |||||||| |||||||||||| ||| | |||||||  |||||||| ||| |  |||| |||||||| |||||| ||||||||    
5124433 caatcagttcatcatatataatatacattgttgtctccttcacaatgaagcggttcttaaaaacaaaaacaaattccacttt 5124514  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 233
Target Start/End: Original strand, 5135929 - 5136017
Alignment:
147 agataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtttcc--gttcaatacttgacactac 233  Q
    |||||||||| |||| | ||||||| |||||  ||||||||||||||||| |  ||||||||||| ||  |||| |||||||| |||||    
5135929 agataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgatactac 5136017  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 237
Target Start/End: Original strand, 5242511 - 5242614
Alignment:
136 catcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtttcc--gttcaatacttgacactac 233  Q
    |||||||||  |||||||||  |||| ||||||||| |||||  ||||||||||||| ||| |  ||||||||||| ||  |||| |||||| | |||||    
5242511 catcatatacgagataaactactgtcttcttcacaatgaaactgttctcaaaaacaaaaacgacctccactttgttaccaggttctatacttcatactac 5242610  T
234 tctc 237  Q
    ||||    
5242611 tctc 5242614  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 5279955 - 5279915
Alignment:
38 agagacttttctgacaaagcattcattttcatcactactac 78  Q
    |||||||| ||||||||||||||||| |||||||| |||||    
5279955 agagacttctctgacaaagcattcatcttcatcaccactac 5279915  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 249
Target Start/End: Complemental strand, 5427196 - 5427081
Alignment:
136 catcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtttcc--gttcaatacttgacactac 233  Q
    |||||||||  |||||||||  |||| || ||||||||||||  ||||||||||||| ||| |  |||| |||||| ||  |||| |||||||| |||||    
5427196 catcatatacgagataaactactgtcttcgtcacaacgaaactgttctcaaaaacaaaaacgacctccattttgttaccaggttctatacttgatactac 5427097  T
234 tctctgctcctcctca 249  Q
    ||| | | ||||||||    
5427096 tctttccccctcctca 5427081  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 137 - 249
Target Start/End: Original strand, 47985393 - 47985507
Alignment:
137 atcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtttcc--gttcaatacttgacactact 234  Q
    |||||||| ||||||||||| | |||||||||||| |||||||||||||||||||||||| |  ||||||||||| ||  |||| |||||||| ||||||    
47985393 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact 47985492  T
235 ctctgctcctcctca 249  Q
    |||| | ||||||||    
47985493 ctctccccctcctca 47985507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 137 - 249
Target Start/End: Original strand, 47994680 - 47994794
Alignment:
137 atcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtttccg--ttcaatacttgacactact 234  Q
    |||||||| ||||||||||| | |||||||||||| |||||||||||||||||||||||| |  ||||||||||| |||  ||| |||||||| ||||||    
47994680 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactact 47994779  T
235 ctctgctcctcctca 249  Q
    |||| | ||||||||    
47994780 ctctccccctcctca 47994794  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 137 - 249
Target Start/End: Original strand, 48003967 - 48004081
Alignment:
137 atcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtttcc--gttcaatacttgacactact 234  Q
    |||||||| ||||||||||| | |||||||||||| |||||||||||||||||||||||| |  ||||||||||| ||  |||| |||||||| ||||||    
48003967 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact 48004066  T
235 ctctgctcctcctca 249  Q
    |||| | ||||||||    
48004067 ctctccccctcctca 48004081  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 137 - 249
Target Start/End: Original strand, 48013252 - 48013366
Alignment:
137 atcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtttccg--ttcaatacttgacactact 234  Q
    |||||||| ||||||||||| | |||||||||||| |||||||||||||||||||||||| |  ||||||||||| |||  ||| |||||||| ||||||    
48013252 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactact 48013351  T
235 ctctgctcctcctca 249  Q
    |||| | ||||||||    
48013352 ctctccccctcctca 48013366  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 4132576 - 4132676
Alignment:
95 atcttgtgcatgacactcctccactttttcagcaatcagtccatcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaaca 194  Q
    ||||||||||||||| | | |||  |||||| ||||  || |||||||||| |||||||||| |||| || |||||| |||||  ||| |||||||||||    
4132576 atcttgtgcatgacattgccccaaattttcaccaattggttcatcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaacaaca 4132675  T
195 a 195  Q
    |    
4132676 a 4132676  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 4122643 - 4122717
Alignment:
136 catcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgt 210  Q
    |||||||||| |||||||||| |||| || |||||| |||||  ||  |||||||||||||||  ||||||||||    
4122643 catcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaatctccactttgt 4122717  T

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Target: scaffold0294 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 7878 - 7955
Alignment:
138 tcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtttccg 215  Q
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7878 tcatatataagataaattgttgtttctttcgcaatgaaaccgtccccaaaaacaacaacaacctccactttgtttccg 7955  T

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