View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_low_96 (Length: 238)
Name: NF1763_low_96
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_low_96 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 490083 - 490297
Alignment:
| Q |
18 |
ctatttcatgttaggcctatgattaggccattgaaactatctctaagtcggttaaaggattctctaaaaaaggtaggttaaaggattgatagatagcaaa |
117 |
Q |
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| T |
490083 |
ctatttcatgttaggcctatgattaagccattgaaactatctctaagtaggttaaaggattctctaaaaaaggtaggttaaagaattgataa----caaa |
490178 |
T |
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| Q |
118 |
agaattcccttgtttaaagtaaatgagatattttgtgatgagaaaaagcatgtataagctgtgtcgacaataagttgcatcatcagaacataatgcaaat |
217 |
Q |
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| T |
490179 |
ggaattcccttgtttaaagtaaatgagatatt--gtgatgagaaaaagcatgtataagctgagtcggcaataagttgcatcatcagaacataatgcaaat |
490276 |
T |
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| Q |
218 |
agtaatattaacaacactcat |
238 |
Q |
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| T |
490277 |
agtagtaatagcaacattcat |
490297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 498026 - 498114
Alignment:
| Q |
18 |
ctatttcatgttaggcctatgattaggccattgaaactatctcta---agtcggttaaaggattctctaaaaaaggtaggttaaaggatt |
104 |
Q |
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| T |
498026 |
ctatttcatgttaggcttttaattaggccattgaaaccatctctatgtattaggttaaaggattccctaaaaaa-gtaggttaaaggatt |
498114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 492635 - 492680
Alignment:
| Q |
193 |
tgcatcatcagaacataatgcaaatagtaatattaacaacactcat |
238 |
Q |
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| T |
492635 |
tgcatcatcagagcataatgcaaatagtagtattatcaacactcat |
492680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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