View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17640_high_1 (Length: 866)
Name: NF17640_high_1
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 17 - 381
Target Start/End: Original strand, 29841194 - 29841558
Alignment:
| Q |
17 |
ataaaccgcgatctatacactcacgaaaggtaaattttcccgatttcatgactaaccttgttacctaactgcaatttaataatcattcttgtggtaaatg |
116 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29841194 |
ataaaccgtgatctatacactcacgaaaggtaaattttcccgatttcatgactaaccttgtttcctaactgcaatttaataatcattcttgtggtaaatg |
29841293 |
T |
|
| Q |
117 |
aaaaagaagaggactaatgaaaacaatattttatattttataacaggatcatggagacagctccaacattgcctgaattttccttggcattgaaaccaga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29841294 |
aaaaagaagaggactaatgaaaacaatattttatattttataacaggatcatggagacagctccaacattgcctgaattttccttggcattgaaaccaga |
29841393 |
T |
|
| Q |
217 |
tgaataccaacttccactagtggactcttcttggagaacagaaaacataaaagtgacacaaactcattctaaccatctcaatggtgacaaatgatcaaat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29841394 |
tgaataccaacttccactagtggactcttcttggagaacagaaaacataaaagtgacacaaactcattctaaccatctcaatggtgacaaatgatcaaat |
29841493 |
T |
|
| Q |
317 |
actatgaatttgcaaatcttatgaaaatgttgactttcttgaaaggtgtaagtcaaagaatggtg |
381 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29841494 |
actatgaatttgcaaatcttatgaaaatgttgactttcttgaaaggtgtaagtcaaagaagggtg |
29841558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 444 - 733
Target Start/End: Original strand, 29841621 - 29841911
Alignment:
| Q |
444 |
gatcacataattcaaagataccttgaaagtagagcttccattggctttaataaaaatttgacactcagggaaaaagaaaggggatccttcccaatatata |
543 |
Q |
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| T |
29841621 |
gatcacataattcaaagataccttgaaagtagagcttccattggctttaatgaaaatttgacactcaaggaaaaagaaaggggatccttcccaatatata |
29841720 |
T |
|
| Q |
544 |
ccaataaa-taaagacagttacatcattgatttagtatacagaatttttgcaagtggttgtgtgtaaaattgacttgtgaattgtagcgaaacaagtata |
642 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29841721 |
ccaataaaataaagacagttacatcattcatttagtatacagaatttttgcaagtggttgtgtgtaaaattgacttgtgaattgtagcgaaacaagtata |
29841820 |
T |
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| Q |
643 |
atacaagcgcaaagtgtgtaaagaaaaacctatgtattttcactaagaggtggttttgtgattgaatggaatattcggaatgttgatcatc |
733 |
Q |
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| T |
29841821 |
atacaagcacaaagtgtgtaaagaaaaacctatgtattttcacgaagaggtggttttgtgattgaatgaaatattcggaatgttgatcatc |
29841911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 17 - 381
Target Start/End: Complemental strand, 29830343 - 29829977
Alignment:
| Q |
17 |
ataaaccgcgatctatacactcacgaaaggtaaattttcccgatttcatgactaaccttgttacctaactgcaatttaataatcattcttgtggtaaatg |
116 |
Q |
| |
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|||||||||||||| ||||| ||||||||||||||||||| || ||||||||||| || ||| |||| |||||| | || ||||||||||| ||| ||| |
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| T |
29830343 |
ataaaccgcgatctgtacacccacgaaaggtaaattttccagagttcatgactaatctggtttcctatttgcaatctgatgatcattcttgtagtacatg |
29830244 |
T |
|
| Q |
117 |
aaaaagaagaggactaatgaaaacaatattt-tatattttataacaggatcatggagacagctccaacattgcctgaattttccttggcattgaaaccag |
215 |
Q |
| |
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|||||||| |||||||| | || ||||| | | ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
29830243 |
aaaaagaaaaggactaacgtaagcaatactgctgtattttacgacaggatcatggagacagctccaactttgcctgaattttccttggcattgaaaccag |
29830144 |
T |
|
| Q |
216 |
atgaataccaacttccactagtgg-actcttcttggagaacagaaaacataaaagtgacacaaactcattctaaccatctcaatggtgacaaatgatcaa |
314 |
Q |
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||||||| |||||||||| ||||| |||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29830143 |
atgaatatcaacttccaccagtgggactcttcttggagaactgagaacataaaattgacacaaactcattctaaccatctcaatggtgacaaatgatcaa |
29830044 |
T |
|
| Q |
315 |
atactatgaatttgcaaatcttatgaaaatgttgactttcttgaaaggtgtaagtcaaagaatggtg |
381 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
29830043 |
atactaggaatttgcaaatcttatgaaaatgttgactttcttgaaaggtgcaagtcaaagaagggtg |
29829977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 447 - 733
Target Start/End: Complemental strand, 29829861 - 29829573
Alignment:
| Q |
447 |
cacataattcaaagataccttgaaagtagagcttccattggctttaataaaaatttgacactcagggaaaaagaaaggggatccttcccaatatatacca |
546 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||| |||||||||||| |
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| T |
29829861 |
cacataattcaaagataccttgaaagtagaacttccattggctttaatgaaaatttgacactcaaggaaaaggaaaggggatccttctcaatatatacca |
29829762 |
T |
|
| Q |
547 |
ataaataaagacagttacatcattgatttagtatacagaatttttgcaagtggttgtgtgtaaaattgacttgtgaattgtagcgaaacaagtataatac |
646 |
Q |
| |
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|||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||| |||| | |||||||||||||||| |
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| T |
29829761 |
ataaataaagtcagttacatcattcatttaatatacagaatttttgcaagtggttgtgtgtaaaattgacctgtgcattggggtgaaacaagtataatac |
29829662 |
T |
|
| Q |
647 |
aagcgcaaagtgtgt--aaagaaaaacctatgtattttcactaagaggtggttttgtgattgaatggaatattcggaatgttgatcatc |
733 |
Q |
| |
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|||| |||||||||| ||| |||||||||||||||||||| ||||| |||||||||| ||||||||||||||| |||||||||||||| |
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| T |
29829661 |
aagcacaaagtgtgtggaaaaaaaaacctatgtattttcaccaagagttggttttgtggttgaatggaatattcagaatgttgatcatc |
29829573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 731 - 821
Target Start/End: Original strand, 29841964 - 29842054
Alignment:
| Q |
731 |
atcctccaagctacttttgtgattgagtacatggattccgctttttatatgaattgatttcatatacctaacctctgcatggagccattca |
821 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29841964 |
atcctccaagctacttttgtgattgagtacatggattccgctttttatacgaattgatttcatatacctaacctctgcatggagccattca |
29842054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 731 - 793
Target Start/End: Complemental strand, 29829509 - 29829447
Alignment:
| Q |
731 |
atcctccaagctacttttgtgattgagtacatggattccgctttttatatgaattgatttcat |
793 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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|
| T |
29829509 |
atcctccaagctacttttgtgattgagtacattgattccgctttttatacgaattgatttcat |
29829447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 153 - 261
Target Start/End: Complemental strand, 34623750 - 34623642
Alignment:
| Q |
153 |
tttataacaggatcatggagacagctccaacattgcctgaattttccttggcattgaaaccagatgaataccaacttccactagtggactcttcttggag |
252 |
Q |
| |
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||||| |||| |||||||| ||||| |||||||||||||| ||| ||||||| |||||||||||||| || |||||||||| |||| |||||||||| |
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| T |
34623750 |
tttattacagaatcatggaaacagcaccaacattgcctgattttgccttggccttgaaaccagatgattatcaacttccacaagtgagtccttcttggag |
34623651 |
T |
|
| Q |
253 |
aacagaaaa |
261 |
Q |
| |
|
||||||||| |
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|
| T |
34623650 |
aacagaaaa |
34623642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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