View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17640_high_12 (Length: 476)
Name: NF17640_high_12
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 15 - 452
Target Start/End: Original strand, 5774304 - 5774733
Alignment:
| Q |
15 |
acatcatcatggaaagaagaaaggtgaaaaatcagagatgaagcacatgtgcgtgtgcagaaatttttcaaatgcctaggtgaaatactattatatatat |
114 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5774304 |
acatcatcatggaaagaagaaaggttaaaaatcagagatgaagcacatgtgtgtgtgcagaaatttttcaaatgcctaggtgaaatactattatata--- |
5774400 |
T |
|
| Q |
115 |
aactttactcattcgattagttacattctaaataacacaaaatttccacaannnnnnnnnataactgacctgagtttctttaacagtgtatctctcaagt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5774401 |
-actttactcattcgattagttacattctaaataacacaaaatttccacaattcctttttataactgacctgagtttctttaacagtgtatctctcaagt |
5774499 |
T |
|
| Q |
215 |
acggttttcttctcattgtcagtcagcagctgatgttctggcacaagcttgtgatatcttacattaaccagcaattcagcctcctgcaagcacgcacaca |
314 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5774500 |
acggttttcttctcattgtcagtcagcagctgatgttctggcacaagcttgtgatatcttacattaaccagcaattcagcctcctgcaagcacgcataca |
5774599 |
T |
|
| Q |
315 |
ctaacaacagttacctcaaccataaacaaccaccacagaatttgattgatcgatcgatcgaatgatgaattacctgaaaaacttccaaatgatatttgga |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
5774600 |
ctaacaacagttacctcaaccataaacaaccaccacagaatttgattgattgatcgat----tgatgaattacctgaaaaacttccaaatgaaatttgga |
5774695 |
T |
|
| Q |
415 |
gtcgaactgagagatactgttccatgccatgttagtaa |
452 |
Q |
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| T |
5774696 |
gtcgaactgagagatactgttccatgccatgttagtaa |
5774733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 175 - 419
Target Start/End: Original strand, 5768189 - 5768429
Alignment:
| Q |
175 |
ataactgacctgagtttctttaacagtgtatctctcaagtacggttttcttctcattgtcagtcagcagctgatgttctggcacaagcttgtgatatctt |
274 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||| |
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|
| T |
5768189 |
ataactgacctgagtttctttaacggtgtatctctcgagtaaggttttcttctcattgtcggtcagcacctgatgttctggcacaagctcgtgatatctt |
5768288 |
T |
|
| Q |
275 |
acattaaccagcaattcagcctcctgcaagcacgcacacactaacaacagttacctcaaccataaacaaccaccacagaatttgattgatcgatcgatcg |
374 |
Q |
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|| |||||||||||||||||||||| |||| ||||| ||||||||||| |||||||||||||| ||||||||||||| |||||||||||| ||| ||| |
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| T |
5768289 |
acgttaaccagcaattcagcctccttcaagaacgcatacactaacaacggttacctcaaccattaacaaccaccacaaaatttgattgattgatggat-- |
5768386 |
T |
|
| Q |
375 |
aatgatgaattacctgaaaaacttccaaatgatatttggagtcga |
419 |
Q |
| |
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|
| T |
5768387 |
--tgatgaattacctgaaaaacttccaaatgaaatttggagtcga |
5768429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 178 - 299
Target Start/End: Complemental strand, 465800 - 465679
Alignment:
| Q |
178 |
actgacctgagtttctttaacagtgtatctctcaagtacggttttcttctcattgtcagtcagcagctgatgttctggcacaagcttgtgatatcttaca |
277 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||| | |||||||||||| ||||| | || | ||||||||| ||||||||| || | | ||| | |
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| T |
465800 |
actgacctgagtttccttgacagtgtatctctcaagcaaggttttcttctcggtgtcattgagaatctgatgttcaggcacaagcacatgctcttttata |
465701 |
T |
|
| Q |
278 |
ttaaccagcaattcagcctcct |
299 |
Q |
| |
|
||||||||||| || ||||||| |
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|
| T |
465700 |
ttaaccagcaactctgcctcct |
465679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 154
Target Start/End: Original strand, 5768137 - 5768171
Alignment:
| Q |
120 |
tactcattcgattagttacattctaaataacacaa |
154 |
Q |
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|||||||||||||||| |||||||||||||||||| |
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|
| T |
5768137 |
tactcattcgattagtcacattctaaataacacaa |
5768171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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