View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17640_high_16 (Length: 454)
Name: NF17640_high_16
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 22 - 441
Target Start/End: Complemental strand, 25029813 - 25029393
Alignment:
| Q |
22 |
ccatgggacataaacggtgtctctgctgggccaaggaccagggtttt-gtgattttgtccattggaattgattccttcgtggtagtaaaatgtcttcagg |
120 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25029813 |
ccatgggacataaatggtgtctctgctgggccaaggaccagggtttttgtgattttgtccattggaattgattccttcgtggtagtaaaatgtcttcagg |
25029714 |
T |
|
| Q |
121 |
gtgctttaaacttagccatcactggtcacataagtttttaattgtatctggagttaaaactttgtttgaaatagctgttgtggtgtaaaacattgcttgg |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25029713 |
gtgctttaaacttagccatcactggtcacataagtttttaattgtatctggagttaaaactttgtttgaaatagctgttgtggtgtaaaacattgcttgg |
25029614 |
T |
|
| Q |
221 |
ttagcggctgtggactgtggtagattgatcgctgttggttcttgtttgaaagaaaaatcttgtgcttaagatcaaccttgtcattaatttcaattaactt |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25029613 |
ttagcggctgtggactgtggtagattgatcgctgttggttcttgtttgaaagaaaaatcttgtgcttaagatcaaccttttcattaatttcaattaactt |
25029514 |
T |
|
| Q |
321 |
ccatcccgtttaccacacctagaagattagtcatgttttatcatgtgtcgaatttatataccttcattttctgtctgattccatgaaaaaatttcagact |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25029513 |
ccatcccgtttaccacacctagaagattagtcatgttttatcatgtgtcgaatttatataccttcattttctgtctgattccatgaaaaaatttcagact |
25029414 |
T |
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| Q |
421 |
gctttttcccattcaacacct |
441 |
Q |
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||||||||||||||||||||| |
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| T |
25029413 |
gctttttcccattcaacacct |
25029393 |
T |
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