View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17640_high_24 (Length: 362)
Name: NF17640_high_24
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_high_24 |
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Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 9489219 - 9489503
Alignment:
| Q |
18 |
cttgtgagacatttcctcctcatttagctgggtataatcaaatagttgacaaaatttcaatctcatttttagtctccaaaatagtgatatcctttgattc |
117 |
Q |
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| T |
9489219 |
cttgtaagacatttcctcctcatttagctgggtataatcaaataattgacaaaatttcaatctcatttttagtctccaaaatagtgatatcctttgattc |
9489318 |
T |
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| Q |
118 |
caatgataaccataaatccaaacaaggtcctcaaaagtattatatatatattcctaaattttataccaatgtcaaaatgagatatcaagttttgttgtag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9489319 |
caatgataaccataaatccaaacaaggtcctcaaaagtat--tatatatattcctatattttataccaatgtcaaaatgagatatcaagttttgttgtgg |
9489416 |
T |
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| Q |
218 |
ctctttttcttccaattttatccttaaatatgtaggtgttgtcgctatagtccctaaatttatcaaaatagtattgaatgtattttt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
9489417 |
ctctttttcttccaattttatccttaaatatgtaggtgttgtcgctatagtctctaaatttatcaaaataatattgaatgtattttt |
9489503 |
T |
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