View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17640_high_3 (Length: 731)

Name: NF17640_high_3
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17640_high_3
NF17640_high_3
[»] chr5 (29 HSPs)
chr5 (18-717)||(27363720-27364419)
chr5 (110-682)||(20854283-20854846)
chr5 (60-110)||(6476779-6476829)
chr5 (60-110)||(10554560-10554610)
chr5 (33-110)||(19359717-19359794)
chr5 (46-110)||(1281849-1281913)
chr5 (47-110)||(7632108-7632171)
chr5 (77-110)||(234714-234747)
chr5 (77-110)||(235605-235638)
chr5 (77-110)||(237826-237859)
chr5 (77-110)||(1283505-1283538)
chr5 (77-110)||(19128783-19128816)
chr5 (77-110)||(29046042-29046075)
chr5 (62-110)||(4084893-4084941)
chr5 (70-110)||(38056807-38056847)
chr5 (67-110)||(27364482-27364525)
chr5 (80-110)||(1283533-1283563)
chr5 (80-110)||(10554535-10554565)
chr5 (76-106)||(14478938-14478968)
chr5 (77-110)||(236934-236967)
chr5 (77-110)||(1554088-1554121)
chr5 (77-110)||(9407263-9407296)
chr5 (77-110)||(19360481-19360514)
chr5 (77-106)||(22798918-22798947)
chr5 (77-110)||(25858223-25858256)
chr5 (77-110)||(28705178-28705211)
chr5 (77-110)||(28705884-28705917)
chr5 (77-110)||(29087938-29087971)
chr5 (77-110)||(34709042-34709075)
[»] chr1 (44 HSPs)
chr1 (110-682)||(46811545-46812129)
chr1 (18-110)||(30932743-30932834)
chr1 (326-415)||(169150-169239)
chr1 (326-413)||(11704379-11704468)
chr1 (21-111)||(27790657-27790747)
chr1 (463-523)||(169352-169412)
chr1 (168-216)||(169043-169091)
chr1 (564-654)||(169415-169503)
chr1 (19-106)||(7406951-7407038)
chr1 (477-554)||(11704513-11704591)
chr1 (593-681)||(11704615-11704704)
chr1 (77-111)||(46812193-46812227)
chr1 (77-110)||(4433853-4433886)
chr1 (77-110)||(19172581-19172614)
chr1 (77-110)||(24991983-24992016)
chr1 (77-110)||(25469092-25469125)
chr1 (53-110)||(27256694-27256751)
chr1 (53-110)||(34308486-34308543)
chr1 (77-110)||(34309236-34309269)
chr1 (77-110)||(47967875-47967908)
chr1 (77-110)||(49680824-49680857)
chr1 (76-108)||(37577650-37577682)
chr1 (76-111)||(37853140-37853175)
chr1 (75-110)||(45818034-45818069)
chr1 (68-106)||(8987807-8987845)
chr1 (76-110)||(13142672-13142706)
chr1 (60-110)||(13262846-13262896)
chr1 (76-110)||(17171944-17171978)
chr1 (77-110)||(4439212-4439245)
chr1 (70-103)||(6059064-6059097)
chr1 (77-110)||(7559205-7559238)
chr1 (77-110)||(8988554-8988587)
chr1 (77-110)||(10120796-10120829)
chr1 (77-110)||(10121558-10121591)
chr1 (77-110)||(11704814-11704847)
chr1 (77-110)||(13263522-13263555)
chr1 (77-110)||(17172668-17172701)
chr1 (77-110)||(24992750-24992783)
chr1 (77-110)||(25468523-25468556)
chr1 (77-110)||(28182078-28182111)
chr1 (77-110)||(30663371-30663404)
chr1 (77-110)||(30663982-30664015)
chr1 (77-110)||(30931901-30931934)
chr1 (77-110)||(46391872-46391905)
[»] chr3 (28 HSPs)
chr3 (110-682)||(29854054-29854606)
chr3 (465-717)||(11460412-11460665)
chr3 (18-110)||(55373653-55373745)
chr3 (18-75)||(55372769-55372826)
chr3 (46-110)||(17603936-17604000)
chr3 (70-110)||(17605720-17605760)
chr3 (77-110)||(265104-265137)
chr3 (77-110)||(17603182-17603215)
chr3 (77-110)||(21727535-21727568)
chr3 (77-110)||(44699826-44699859)
chr3 (53-110)||(46150711-46150768)
chr3 (77-110)||(48413333-48413366)
chr3 (77-110)||(48648217-48648250)
chr3 (70-110)||(52282411-52282451)
chr3 (75-110)||(40872812-40872847)
chr3 (77-108)||(41458049-41458080)
chr3 (77-111)||(11652306-11652340)
chr3 (68-110)||(31974665-31974707)
chr3 (76-110)||(37987247-37987281)
chr3 (53-103)||(45081385-45081435)
chr3 (77-110)||(981681-981714)
chr3 (77-110)||(13477784-13477817)
chr3 (77-110)||(14871167-14871200)
chr3 (77-110)||(20212994-20213027)
chr3 (77-110)||(37988224-37988257)
chr3 (77-110)||(46149643-46149676)
chr3 (77-110)||(48649179-48649212)
chr3 (77-110)||(48765076-48765109)
[»] chr7 (41 HSPs)
chr7 (230-682)||(23902147-23902599)
chr7 (573-682)||(23889952-23890061)
chr7 (18-110)||(7668495-7668587)
chr7 (326-413)||(46428389-46428478)
chr7 (576-681)||(46428608-46428714)
chr7 (110-170)||(23902598-23902665)
chr7 (477-572)||(46428523-46428619)
chr7 (46-110)||(47719679-47719743)
chr7 (68-110)||(25342510-25342552)
chr7 (68-110)||(25343316-25343358)
chr7 (76-110)||(45099898-45099932)
chr7 (68-110)||(46428200-46428242)
chr7 (77-110)||(13785599-13785632)
chr7 (53-110)||(19068377-19068434)
chr7 (77-110)||(25599035-25599068)
chr7 (77-110)||(26636116-26636149)
chr7 (77-110)||(30660606-30660639)
chr7 (77-110)||(30661461-30661494)
chr7 (77-110)||(37949618-37949651)
chr7 (77-110)||(37950473-37950506)
chr7 (77-110)||(43065122-43065155)
chr7 (70-110)||(3029197-3029237)
chr7 (62-110)||(3903330-3903378)
chr7 (62-110)||(24389607-24389655)
chr7 (62-110)||(24719348-24719396)
chr7 (60-99)||(18977033-18977072)
chr7 (76-111)||(31277435-31277470)
chr7 (45-104)||(36379661-36379720)
chr7 (67-110)||(37395495-37395538)
chr7 (77-111)||(3027986-3028020)
chr7 (68-110)||(18977766-18977808)
chr7 (68-110)||(37706441-37706483)
chr7 (77-110)||(1417621-1417654)
chr7 (77-110)||(3772532-3772565)
chr7 (77-110)||(19067650-19067683)
chr7 (77-110)||(24453732-24453765)
chr7 (77-110)||(26636866-26636899)
chr7 (77-110)||(27948459-27948492)
chr7 (77-110)||(31278160-31278193)
chr7 (77-110)||(38225981-38226014)
chr7 (77-110)||(45161982-45162015)
[»] chr4 (39 HSPs)
chr4 (326-413)||(47785456-47785545)
chr4 (60-110)||(19080399-19080449)
chr4 (576-681)||(47785220-47785326)
chr4 (68-110)||(53733728-53733770)
chr4 (477-572)||(47785315-47785411)
chr4 (46-110)||(55976930-55976994)
chr4 (75-110)||(2444386-2444421)
chr4 (43-110)||(44469506-44469573)
chr4 (76-110)||(19550300-19550334)
chr4 (68-110)||(47785796-47785838)
chr4 (77-110)||(16903649-16903682)
chr4 (77-110)||(20774186-20774219)
chr4 (77-110)||(30573715-30573748)
chr4 (53-110)||(31329699-31329756)
chr4 (77-110)||(47688485-47688518)
chr4 (77-110)||(52871312-52871345)
chr4 (77-110)||(53772821-53772854)
chr4 (77-110)||(55976180-55976213)
chr4 (70-110)||(53147885-53147925)
chr4 (47-110)||(24158796-24158859)
chr4 (77-108)||(32088835-32088866)
chr4 (35-110)||(42880922-42880997)
chr4 (75-106)||(50184446-50184477)
chr4 (77-107)||(3654521-3654551)
chr4 (80-110)||(16903677-16903707)
chr4 (77-110)||(599307-599340)
chr4 (77-106)||(5046002-5046031)
chr4 (77-110)||(8248526-8248559)
chr4 (77-110)||(8266191-8266224)
chr4 (77-110)||(9365822-9365855)
chr4 (77-110)||(11938725-11938758)
chr4 (77-110)||(24551929-24551962)
chr4 (77-110)||(26147038-26147071)
chr4 (77-110)||(42882687-42882720)
chr4 (77-110)||(43146654-43146687)
chr4 (77-110)||(53732449-53732482)
chr4 (77-106)||(53773592-53773621)
chr4 (77-110)||(55000701-55000734)
chr4 (77-110)||(55001446-55001479)
[»] scaffold0176 (1 HSPs)
scaffold0176 (43-110)||(26605-26672)
[»] chr2 (26 HSPs)
chr2 (29-110)||(6584184-6584265)
chr2 (60-110)||(12725603-12725653)
chr2 (53-110)||(36237645-36237702)
chr2 (68-110)||(1297119-1297161)
chr2 (65-111)||(8669189-8669235)
chr2 (68-110)||(9275600-9275642)
chr2 (60-110)||(29719460-29719510)
chr2 (77-111)||(40252035-40252069)
chr2 (65-110)||(11007245-11007290)
chr2 (77-110)||(11750271-11750304)
chr2 (77-110)||(16692979-16693012)
chr2 (33-110)||(26588978-26589055)
chr2 (77-110)||(29513152-29513185)
chr2 (68-110)||(1296393-1296435)
chr2 (68-110)||(9276326-9276368)
chr2 (60-110)||(24933850-24933900)
chr2 (76-110)||(27177926-27177960)
chr2 (48-110)||(34812832-34812894)
chr2 (77-110)||(8542553-8542586)
chr2 (77-110)||(9540345-9540378)
chr2 (77-110)||(15902887-15902920)
chr2 (77-106)||(18820450-18820479)
chr2 (77-110)||(22301875-22301908)
chr2 (77-106)||(22560573-22560602)
chr2 (77-110)||(29559425-29559458)
chr2 (77-110)||(42182620-42182653)
[»] chr6 (13 HSPs)
chr6 (29-103)||(18227751-18227825)
chr6 (77-110)||(8488482-8488515)
chr6 (77-110)||(10171289-10171322)
chr6 (77-110)||(19311832-19311865)
chr6 (77-110)||(19322996-19323029)
chr6 (77-110)||(26529518-26529551)
chr6 (62-106)||(505554-505598)
chr6 (68-110)||(19323763-19323805)
chr6 (77-106)||(1366985-1367014)
chr6 (77-110)||(9441250-9441283)
chr6 (77-110)||(10171971-10172004)
chr6 (77-110)||(26528836-26528869)
chr6 (77-110)||(33436279-33436312)
[»] scaffold1213 (1 HSPs)
scaffold1213 (43-102)||(1917-1976)
[»] scaffold0012 (1 HSPs)
scaffold0012 (43-110)||(181023-181090)
[»] chr8 (15 HSPs)
chr8 (33-110)||(8373654-8373731)
chr8 (63-110)||(41974654-41974701)
chr8 (68-110)||(38576298-38576340)
chr8 (18-71)||(15057410-15057463)
chr8 (77-110)||(32414529-32414562)
chr8 (77-109)||(11686241-11686273)
chr8 (77-107)||(22320391-22320421)
chr8 (77-110)||(3043970-3044003)
chr8 (77-106)||(3165127-3165156)
chr8 (77-110)||(8372927-8372960)
chr8 (77-110)||(9197109-9197142)
chr8 (77-110)||(26654383-26654416)
chr8 (77-110)||(28929859-28929892)
chr8 (77-110)||(31602030-31602063)
chr8 (77-110)||(31641525-31641558)
[»] scaffold0085 (2 HSPs)
scaffold0085 (76-110)||(22075-22109)
scaffold0085 (68-110)||(15855-15897)
[»] scaffold0096 (1 HSPs)
scaffold0096 (77-110)||(39909-39942)
[»] scaffold1207 (1 HSPs)
scaffold1207 (70-110)||(1600-1640)
[»] scaffold0504 (1 HSPs)
scaffold0504 (76-110)||(5384-5418)
[»] scaffold2007 (1 HSPs)
scaffold2007 (77-110)||(764-797)
[»] scaffold0093 (1 HSPs)
scaffold0093 (77-110)||(23734-23767)


Alignment Details
Target: chr5 (Bit Score: 640; Significance: 0; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 640; E-Value: 0
Query Start/End: Original strand, 18 - 717
Target Start/End: Original strand, 27363720 - 27364419
Alignment:
Q  18 tgtgaggtttgtaaatgaataaatgtgaacctttagatcaatttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgtttcctct 117  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27363720 tgtgaggtttgtaaatgaataaatgtgaacttttagatcaatttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgtttcctct 27363819  T
Q  118 acctaacgttctaccgttgagtgtgttatgagaaacaagggaaacaaagtagcaaacggtggaagcatgtgtgtcatgttcatggatttcaattacacaa 217  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27363820 acctaacgttctgccgttgagtgtgttatgagaaacaagggaaacaaagtagcaaacggtggaagcatgtgtgtcatgttcatgtatttcaattacacaa 27363919  T
Q  218 taatcaagttctgccacagcatgtgttgtcctttgtaaactcagttttagatctatgccaagaaaaaagtgcatcgtgtatcaggattatagctatgtaa 317  Q
    ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27363920 taaccaagttccgccacagcatgtgttgtcctttgtaaactcagttttagatctatgccaagaaaaaagtgcatcgtgtatcaggattatagctatgtaa 27364019  T
Q  318 attcatcaagggatgaatgaggttgcaatgaagccatgttgtcaatctaggaaagcttctgttttactgtcatcctcttccatggtttttcaattttatg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27364020 attcatcaagggatgaatgaggttgcaatgaagccatgttgtcaatctaggaaagcttctgttttactgtcatcctcttccatggtttttcaattttatg 27364119  T
Q  418 attctccatattcagaagaacattgatgaattacaaaatcacgtttccataaaattgcccatagagattttccatgtcgattggagaataagaggttatt 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27364120 attctccatattcagaagaacattgatgaattacaaaatcacgtttccataaaattgctcatagagattttccatgtcgattggagaataagaggttatt 27364219  T
Q  518 gataaaattgatctccaatctataaattaatgattttaaaacgatgaaattgatacccataaaattaatatccagtcgattggagaaagaatgagaacaa 617  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27364220 gataaaattgatctccaatctataaattaatgattttaaaacgatgaaattgatacccataaaattaatatccaatcgattggagaaagaatgagaacaa 27364319  T
Q  618 ggaggttattgctcatagaaatttccaatctttaaaataatggttacggtgagagaaaggatgagnnnnnnnntacaagaggtactaaggtgtataaaat 717  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||    
T  27364320 ggaggttattgctcatagagatttccaatctgtaaaataatggttacggtgagagaaaggatgagaaaaaaaatacaagaggtactaaggtgtataaaat 27364419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 110 - 682
Target Start/End: Complemental strand, 20854846 - 20854283
Alignment:
Q  110 tttcctctacctaacgttctaccgttgagtgtgttatgagaaacaagggaaacaaagtagcaaacggtggaagcatgtgtgtcatgttcatggatttcaa 209  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  20854846 tttcctctacctaacgttctgtcattgagtgtgttatgagaaacaagggaaacaaagtagcaaacggtggaagcatgtgt--catgttcatggatttcaa 20854749  T
Q  210 ttacacaataatcaagttctgccacagcatgtgttgtcctttgtaaactcagttttagatctatgccaagaaaaaagtgcatcgtgtatcaggattatag 309  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  20854748 ttacacaataatcaagttctgccatagcatgtgttgtcctttgtaaattcagttttagatctatgctaagaaaaaagtgcatcgtgtataaggattatag 20854649  T
Q  310 ctatgtaaattcatcaagggatgaatgaggttgcaatgaagccatgttgtcaatctaggaaagcttctgttttactgtcatcctcttccatggtttttca 409  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||     
T  20854648 ctatgtaaattcatcaagggatgaatgatgttgcaatgaagccatgttgtgaatctaggaaagcttctgttttactgtcatcctcttccatgatttttcc 20854549  T
Q  410 attttatgattctccatattcagaagaacattgatgaattacaaaatcacgtttccataaaattgcccatagagattttccatgtcgattggagaataag 509  Q
    |||||||||||||||||||||||||||||| | | ||||| ||||||||||||||||||||||||| |||||||||||||||| | |||||| ||| |||    
T  20854548 attttatgattctccatattcagaagaacactaacgaatttcaaaatcacgtttccataaaattgctcatagagattttccatattgattggcgaacaag 20854449  T
Q  510 aggttattgataaaattgatctccaatctataaattaatgattttaaaacgatgaaattgatacccataaaattaatatccagtcgattggagaaagaat 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  20854448 aggttattgataaaattgatctccaatctataaattaatgattttaaaacgataaaattgatacccataaaattaatatccagtcgattggagaaagaat 20854349  T
Q  610 gagaacaaggaggttattgctcatagaaatttccaatctttaaaataatggttacggtgagagaaaggatgag 682  Q
    ||       ||||||||||||||  || ||||||||| | |||||||||||||| ||||||||||||||||||    
T  20854348 ga-------gaggttattgctcaatgagatttccaatatgtaaaataatggttatggtgagagaaaggatgag 20854283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 6476779 - 6476829
Alignment:
Q  60 ttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  6476779 ttaaatgaatggttgagatttggtgtcaacgaatccgttgacacctggtgt 6476829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 10554610 - 10554560
Alignment:
Q  60 ttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  10554610 ttaaatgaatggttgagatttggtgtcaacgaatccgttgacacctggtgt 10554560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 19359794 - 19359717
Alignment:
Q  33 tgaataaatgtgaacctttagatcaatttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||| |||||||||||||||||||||   |||| || ||||   ||||||||||||||||||||||||||||||||||    
T  19359794 tgaacaaatgtgaacctttagatcaaacgaaatcaacggttaatatttggtgtcaacgaatccgttgacacctggtgt 19359717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 1281913 - 1281849
Alignment:
Q  46 acctttagatcaatttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||| || ||||||||| | ||   ||||||||||||||||||||||||||||||||||    
T  1281913 acctttagattaaattaaatgaacgtttaagatttggtgtcaacgaatccgttgacacctggtgt 1281849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 47 - 110
Target Start/End: Complemental strand, 7632171 - 7632108
Alignment:
Q  47 cctttagatcaatttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||  ||||| ||||| |   ||||||||||||||||||||||||||||||||||    
T  7632171 cctttagatcaaaataaataaatggataagatttggtgtcaacgaatccgttgacacctggtgt 7632108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 234747 - 234714
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  234747 atttggtgtcaacgaatccgttgacacctggtgt 234714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 235638 - 235605
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  235638 atttggtgtcaacgaatccgttgacacctggtgt 235605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 237826 - 237859
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  237826 atttggtgtcaacgaatccgttgacacctggtgt 237859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 1283505 - 1283538
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  1283505 atttggtgtcaacgaatccgttgacacctggtgt 1283538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 19128816 - 19128783
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  19128816 atttggtgtcaacgaatccgttgacacctggtgt 19128783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 29046075 - 29046042
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  29046075 atttggtgtcaacgaatccgttgacacctggtgt 29046042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 4084941 - 4084893
Alignment:
Q  62 aaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||  ||||||||||||||||| |||||||||| |||||    
T  4084941 aaatgaatggttgagatttggtgtcaacgaattcgttgacaccaggtgt 4084893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 38056847 - 38056807
Alignment:
Q  70 ggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||| |||||||||||||| ||||||||||||||||||||    
T  38056847 ggttgaaatttggtgtcaaccaatccgttgacacctggtgt 38056807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 27364482 - 27364525
Alignment:
Q  67 aatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||    
T  27364482 aatggttgagatttggtgtcaacgaatccattgacacctggtgt 27364525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 110
Target Start/End: Original strand, 1283533 - 1283563
Alignment:
Q  80 tggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||||||||||||||||||||    
T  1283533 tggtgtcaacgaatccgttgacacctggtgt 1283563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 110
Target Start/End: Complemental strand, 10554565 - 10554535
Alignment:
Q  80 tggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||||||||||||||||||||    
T  10554565 tggtgtcaacgaatccgttgacacctggtgt 10554535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 106
Target Start/End: Complemental strand, 14478968 - 14478938
Alignment:
Q  76 aatttggtgtcaacgaatccgttgacacctg 106  Q
    |||||||||||||||||||||||||||||||    
T  14478968 aatttggtgtcaacgaatccgttgacacctg 14478938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 236934 - 236967
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||| |||||||||||||||||||||||    
T  236934 atttggtgtctacgaatccgttgacacctggtgt 236967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 1554088 - 1554121
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||| ||||||||||||||||    
T  1554088 atttggtgtcaacgaattcgttgacacctggtgt 1554121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 9407296 - 9407263
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||| ||||||    
T  9407296 atttggtgtcaacgaatccgttgacacttggtgt 9407263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 19360481 - 19360514
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||| ||||||||||||||||    
T  19360481 atttggtgtcaacgaattcgttgacacctggtgt 19360514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 106
Target Start/End: Complemental strand, 22798947 - 22798918
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctg 106  Q
    ||||||||||||||||||||||||||||||    
T  22798947 atttggtgtcaacgaatccgttgacacctg 22798918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 25858256 - 25858223
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||| ||||    
T  25858256 atttggtgtcaacgaatccgttgacacctagtgt 25858223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 28705211 - 28705178
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||| ||||||||||||||||||||||||    
T  28705211 atttggtgtaaacgaatccgttgacacctggtgt 28705178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 28705884 - 28705917
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||| |||||||||||||||||||||||||||||    
T  28705884 atttagtgtcaacgaatccgttgacacctggtgt 28705917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 29087971 - 29087938
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||| |||||||||||||||||||||    
T  29087971 atttggtgtcaatgaatccgttgacacctggtgt 29087938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 34709042 - 34709075
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||| |||||||||||||||||||||||||    
T  34709042 atttggtgccaacgaatccgttgacacctggtgt 34709075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 452; Significance: 0; HSPs: 44)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 110 - 682
Target Start/End: Complemental strand, 46812129 - 46811545
Alignment:
Q  110 tttcctctacctaacgttctaccgttgagtgtgttatgagaaacaagggaaacaaagtagcaaacggtggaagcatgtgtgtcatgttcatggatttcaa 209  Q
    ||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||    
T  46812129 tttcctctacctatcgttctgtcgttgagtgtgttatgagaaacaagggaaacaaagtagcaaacggtggaagcatttgttttatgttcatggatttcaa 46812030  T
Q  210 ttacacaataatcaagttctgccacagcatgtgttgtcctttgtaaactc------------agttttagatctatgccaagaaaaaagtgcatcgtgta 297  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||| ||            ||||||||||||||||||| ||||||||||||||||||    
T  46812029 ttacacaataaccaagttctgccacaacatgtgttgtcctttgtaaattcctttgtaaattcagttttagatctatgccaataaaaaagtgcatcgtgta 46811930  T
Q  298 tcaggattatagctatgtaaattcatcaagggatgaatgaggttgcaatgaagccatgttgtcaatctaggaaagcttctgttttactgtcatcctcttc 397  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  46811929 tcaagattatagctatgtaaattcatcaagggatgaatgaggttgcaatgaagccatgctgtgaatctaggaaagcttctgttttactgtcatcctcttc 46811830  T
Q  398 catggtttttcaattttatgattctccatattcagaagaacattgatgaattacaaaatcacgtttccataaaattgcccatagagattttccatgtcga 497  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  46811829 catggtttttcaattttttgattctccatattcagaagaacactgacgaatttcaaaatcacgtttccataaaattgctcatagagattttccatgtcga 46811730  T
Q  498 ttggagaataagaggttattgataaaattgatctccaatctataaattaatgattttaaaacgatgaaattgatacccataaaattaatatccagtcgat 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||    
T  46811729 ttggagaataagaggttattgataaaattgatctccaatctataaattaatgattttaaaaagataaaattgatacccataaaattaatatccaatcgat 46811630  T
Q  598 tggagaaagaatgagaacaaggaggttattgctcatagaaatttccaatctttaaaataatggttacggtgagagaaaggatgag 682  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  46811629 tggagaaagaatgagaacaaggaggttattgctcatagagatttccaatctgtaaaataatggttacggtgagagaaaggatgag 46811545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 30932743 - 30932834
Alignment:
Q  18 tgtgaggtttgtaaatgaataaatgtgaacctttagatcaatttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||    
T  30932743 tgtgaggtttgtaaatgaataaatgtgaacctt-agatcaatttaaatgaatggttgagatttggtgccaacgaatccgttgacacctggtgt 30932834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 326 - 415
Target Start/End: Original strand, 169150 - 169239
Alignment:
Q  326 agggatgaatgaggttgcaatgaagccatgttgtcaatctaggaaagcttctgttttactgtcatcctcttccatggtttttcaatttta 415  Q
    ||||||||||||| |||||||||||||||| ||  ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  169150 agggatgaatgagattgcaatgaagccatgctgcaaatttaggaaagcttctgttttagtgtcatcctcttccatggtttttcaatttta 169239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 326 - 413
Target Start/End: Original strand, 11704379 - 11704468
Alignment:
Q  326 agggatgaatgaggttgcaatgaagccatgttgtc--aatctaggaaagcttctgttttactgtcatcctcttccatggtttttcaattt 413  Q
    ||||||||||||| ||||||||||||||||||||   ||||||| ||||||| ||||||| | |||||||||||||||||||||||||||    
T  11704379 agggatgaatgagattgcaatgaagccatgttgtgcaaatctagaaaagcttatgttttattatcatcctcttccatggtttttcaattt 11704468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 27790657 - 27790747
Alignment:
Q  21 gaggtttgtaaatgaataaatgtgaacctttagatcaatttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgtt 111  Q
    ||||||||||| ||||||||||||||||||| | ||||  ||||||||||||   ||||||||||||||  ||||||||||||||||||||    
T  27790657 gaggtttgtaagtgaataaatgtgaacctttggttcaacataaatgaatggtcataatttggtgtcaacctatccgttgacacctggtgtt 27790747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 463 - 523
Target Start/End: Original strand, 169352 - 169412
Alignment:
Q  463 tccataaaattgcccatagagattttccatgtcgattggagaataagaggttattgataaa 523  Q
    ||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||    
T  169352 tccataaaattgctcatagagattttccatatcgattggagaacaagaggttattgataaa 169412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 169043 - 169091
Alignment:
Q  168 agcaaacggtggaagcatgtgtgtcatgttcatggatttcaattacaca 216  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  169043 agcaaacagtggaagcatgtgtgtcatgttcatggatttcaattacaca 169091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 564 - 654
Target Start/End: Original strand, 169415 - 169503
Alignment:
Q  564 aaattgatacccataaaattaatatccagtcgattggagaaagaatgagaacaaggaggttattgctcatagaaatttccaatctttaaaa 654  Q
    ||||||||| |||||||||||||||||| |||||||||||||| ||||| | | | ||||||||||||  | ||||||||||||| |||||    
T  169415 aaattgatatccataaaattaatatccaatcgattggagaaaggatgaggaaaggaaggttattgctc--aaaaatttccaatctataaaa 169503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 7406951 - 7407038
Alignment:
Q  19 gtgaggtttgtaaatgaataaatgtgaacctttagatcaatttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctg 106  Q
    |||||||| |||| ||||||||||||||||||||||||||  |||||||||| |    |||| ||||||||||||| |||||||||||    
T  7406951 gtgaggttcgtaagtgaataaatgtgaacctttagatcaacataaatgaatgatcatgatttagtgtcaacgaatctgttgacacctg 7407038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 477 - 554
Target Start/End: Original strand, 11704513 - 11704591
Alignment:
Q  477 catagagattttccatgtcgattggagaataagaggttattg---ataaaattgatctccaatctataaattaatgatttt 554  Q
    |||||||||||||||| |  |||| |||| ||||||||||||   ||||||||||||||||||||||||||||||||||||    
T  11704513 catagagattttccatat--attgaagaacaagaggttattgctcataaaattgatctccaatctataaattaatgatttt 11704591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 593 - 681
Target Start/End: Original strand, 11704615 - 11704704
Alignment:
Q  593 tcgattggagaaagaatgagaacaaggaggttattgctcatagaaatttccaatctttaaaataatggt-tacggtgagagaaaggatga 681  Q
    |||||||||||||| |||||||||| ||| || ||| || || ||||||||||||| || | ||||||| ||| ||||||||||||||||    
T  11704615 tcgattggagaaaggatgagaacaatgagatttttgatcgtataaatttccaatctatagagtaatggtatacagtgagagaaaggatga 11704704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 111
Target Start/End: Original strand, 46812193 - 46812227
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgtt 111  Q
    |||||||||||||||||||||||||||||||||||    
T  46812193 atttggtgtcaacgaatccgttgacacctggtgtt 46812227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 4433853 - 4433886
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  4433853 atttggtgtcaacgaatccgttgacacctggtgt 4433886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 19172581 - 19172614
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  19172581 atttggtgtcaacgaatccgttgacacctggtgt 19172614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 24992016 - 24991983
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  24992016 atttggtgtcaacgaatccgttgacacctggtgt 24991983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 25469092 - 25469125
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  25469092 atttggtgtcaacgaatccgttgacacctggtgt 25469125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 27256694 - 27256751
Alignment:
Q  53 gatcaatttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||| | |||| || ||||| |||||||||||||||||| ||||||||||||||||    
T  27256694 gatcaaataaaatcaacggttgaaatttggtgtcaacgaatacgttgacacctggtgt 27256751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 34308543 - 34308486
Alignment:
Q  53 gatcaatttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||| | |||| || ||||| |||||||||||||||||| ||||||||||||||||    
T  34308543 gatcaaataaaatcaacggttgaaatttggtgtcaacgaatacgttgacacctggtgt 34308486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 34309236 - 34309269
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  34309236 atttggtgtcaacgaatccgttgacacctggtgt 34309269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 47967908 - 47967875
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  47967908 atttggtgtcaacgaatccgttgacacctggtgt 47967875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 49680857 - 49680824
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  49680857 atttggtgtcaacgaatccgttgacacctggtgt 49680824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 108
Target Start/End: Original strand, 37577650 - 37577682
Alignment:
Q  76 aatttggtgtcaacgaatccgttgacacctggt 108  Q
    |||||||||||||||||||||||||||||||||    
T  37577650 aatttggtgtcaacgaatccgttgacacctggt 37577682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 111
Target Start/End: Original strand, 37853140 - 37853175
Alignment:
Q  76 aatttggtgtcaacgaatccgttgacacctggtgtt 111  Q
    ||||||||||||||||||||||||||||||| ||||    
T  37853140 aatttggtgtcaacgaatccgttgacacctgatgtt 37853175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 110
Target Start/End: Complemental strand, 45818069 - 45818034
Alignment:
Q  75 gaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||| |||||||||||||||||||||    
T  45818069 gaatttggtgtcaatgaatccgttgacacctggtgt 45818034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 8987845 - 8987807
Alignment:
Q  68 atggttggaatttggtgtcaacgaatccgttgacacctg 106  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  8987845 atggttgagatttggtgtcaacgaatccgttgacacctg 8987807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 110
Target Start/End: Original strand, 13142672 - 13142706
Alignment:
Q  76 aatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||| |||||||||||||||||||||||||||||    
T  13142672 aatttagtgtcaacgaatccgttgacacctggtgt 13142706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 13262896 - 13262846
Alignment:
Q  60 ttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||| | |||||  ||||||||||||||||| ||||||||||||||||    
T  13262896 ttaaatggagggttgagatttggtgtcaacgaattcgttgacacctggtgt 13262846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 110
Target Start/End: Complemental strand, 17171978 - 17171944
Alignment:
Q  76 aatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||||||| ||||||||||||||||    
T  17171978 aatttggtgtcaacgaattcgttgacacctggtgt 17171944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 4439212 - 4439245
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||||||||||||||||| |||||    
T  4439212 atttggtgtcaacgaatccgttgacaccaggtgt 4439245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 6059097 - 6059064
Alignment:
Q  70 ggttggaatttggtgtcaacgaatccgttgacac 103  Q
    |||||||||||||||||||||||| |||||||||    
T  6059097 ggttggaatttggtgtcaacgaattcgttgacac 6059064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 7559205 - 7559238
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||| |||||||||||||||||||    
T  7559205 atttggtgtcaacggatccgttgacacctggtgt 7559238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 8988554 - 8988587
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||| |||||||||||||||||||||    
T  8988554 atttggtgtcaaggaatccgttgacacctggtgt 8988587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 10120829 - 10120796
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||| ||||||||||||||||||||    
T  10120829 atttggtgtcaaccaatccgttgacacctggtgt 10120796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 10121558 - 10121591
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||| ||||||||||||||||||||    
T  10121558 atttggtgtcaaccaatccgttgacacctggtgt 10121591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 11704814 - 11704847
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||| ||||||    
T  11704814 atttggtgtcaacgaatccgttgacacttggtgt 11704847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 13263522 - 13263555
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||| ||||||||||||||    
T  13263522 atttggtgtcaacgaatccattgacacctggtgt 13263555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 17172668 - 17172701
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||| |||||||||||||||||||||||||||    
T  17172668 atttggcgtcaacgaatccgttgacacctggtgt 17172701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 24992750 - 24992783
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||| ||||||||||||||||||||||||||||    
T  24992750 atttgatgtcaacgaatccgttgacacctggtgt 24992783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 25468556 - 25468523
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||| |||||||||||||||||||||    
T  25468556 atttggtgtcaatgaatccgttgacacctggtgt 25468523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 28182078 - 28182111
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||| |||||||||||||||||||||    
T  28182078 atttggtgtcaaagaatccgttgacacctggtgt 28182111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 30663404 - 30663371
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||||||||||||| |||||||||    
T  30663404 atttggtgtcaacgaatccgttgatacctggtgt 30663371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 30663982 - 30664015
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||||||||||||||||| |||||    
T  30663982 atttggtgtcaacgaatccgttgacaccaggtgt 30664015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 30931934 - 30931901
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||| ||||||||||||||||||||||||    
T  30931934 atttggtgttaacgaatccgttgacacctggtgt 30931901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 46391872 - 46391905
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||| ||||||||||||||||||||||||||||    
T  46391872 atttgatgtcaacgaatccgttgacacctggtgt 46391905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 110 - 682
Target Start/End: Original strand, 29854054 - 29854606
Alignment:
Q  110 tttcctctacctaacgttctaccgttgagtgtgttatgagaaacaagggaaacaaagtagcaaacggtggaagcatgtgtgtcatgttcatggatttcaa 209  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29854054 tttcctctacctaacgttctgccgttgagtgtgttatgagaaacaagggaaacaaagtagcaaacggtggaagcatgtgtgtcatgtccatggatttcaa 29854153  T
Q  210 ttacacaataatcaagttctgccacagcatgtgttgtcctttgtaaactcagttttagatctatgccaagaaaaaagtgcatcgtgtatcaggattatag 309  Q
    |||||||||| ||||||||||||| |||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29854154 ttacacaatattcaagttctgccatagcatgtgttgtcctttgtacattcagttttagatctatgacaagaaaaaagtgcatcgtgtatcaggattatag 29854253  T
Q  310 ctatgtaaattcatcaagggatgaatgaggttgcaatgaagccatgttgtcaatctaggaaagcttctgttttactgtcatcctcttccatggtttttca 409  Q
    |||| ||| |||||||||||||||||||||||||||||||             |||| |||||||| |||||||||||||||||||||||||||||||||    
T  29854254 ctatttaagttcatcaagggatgaatgaggttgcaatgaa-------------tctaagaaagcttatgttttactgtcatcctcttccatggtttttca 29854340  T
Q  410 attttatgattctccatattcagaagaacattgatgaattacaaaatcacgtttccataaaattgcccatagagattttccatgtcgattggagaataag 509  Q
    |||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||| ||| |||    
T  29854341 attttatgattctccatattcagaagaacactgacgaatttcaaaatcacgtttccataaaattgctcatagagattttccatatcgattggcgaacaag 29854440  T
Q  510 aggttattgataaaattgatctccaatctataaattaatgattttaaaacgatgaaattgatacccataaaattaatatccagtcgattggagaaagaat 609  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||    
T  29854441 aggttattgataaaattgatctccaatctataaattaatgattttaaaactataaaattgatacccataaaattaatatccaatcgattggagaaagaat 29854540  T
Q  610 gagaacaaggaggttattgctcatagaaatttccaatctttaaaataatggttacggtgagagaaaggatgag 682  Q
    ||       |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  29854541 ga-------gaggttattgctcatagagatttccaatctgtaaaataatggttacggtgagagaaaggatgag 29854606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 465 - 717
Target Start/End: Original strand, 11460412 - 11460665
Alignment:
Q  465 cataaaattgcccatagagattttccatgtcgattggagaataagaggttattgataaaattgatctccaatctataaattaatgattttaaaacgatga 564  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  11460412 cataaaatttctcatagagattttccatgtcgattggagaataagaggttattgataaaattgatctccaatctataaataaatgattttaaaacgataa 11460511  T
Q  565 aattgatacccataaaattaatatccagtcgattggagaaagaatgagaacaaggaggttattgctcatagaaatttccaatctttaaaataatggttac 664  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||    
T  11460512 aattgatactcataaaattaatatccaatcgattggagaaagaatgagaacaaggaagttattgctcatagagatttccaatctgtaaaataatggttac 11460611  T
Q  665 ggtgagagaaaggatga-gnnnnnnnntacaagaggtactaaggtgtataaaat 717  Q
    |||||||||||||||||          |||||||||||||||||||||||||||    
T  11460612 ggtgagagaaaggatgataaaaaaaaatacaagaggtactaaggtgtataaaat 11460665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 55373653 - 55373745
Alignment:
Q  18 tgtgaggtttgtaaatgaataaatgtgaacctttagatcaatttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55373653 tgtgaggtttgtaaatgaataaatgtgaacctttagatcaatttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 55373745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 55372769 - 55372826
Alignment:
Q  18 tgtgaggtttgtaaatgaataaatgtgaacctttagatcaatttaaatgaatggttgg 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55372769 tgtgaggtttgtaaatgaataaatgtgaacctttagatcaatttaaatgaatggttgg 55372826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 17603936 - 17604000
Alignment:
Q  46 acctttagatcaatttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||| || ||||||||| | ||   ||||||||||||||||||||||||||||||||||    
T  17603936 acctttagattaaattaaatgaacgtttaagatttggtgtcaacgaatccgttgacacctggtgt 17604000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 17605760 - 17605720
Alignment:
Q  70 ggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  17605760 ggttgaaatttggtgtcaacgaatccgttgacacctggtgt 17605720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 265104 - 265137
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  265104 atttggtgtcaacgaatccgttgacacctggtgt 265137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 17603215 - 17603182
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  17603215 atttggtgtcaacgaatccgttgacacctggtgt 17603182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 21727535 - 21727568
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  21727535 atttggtgtcaacgaatccgttgacacctggtgt 21727568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 44699826 - 44699859
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  44699826 atttggtgtcaacgaatccgttgacacctggtgt 44699859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 46150711 - 46150768
Alignment:
Q  53 gatcaatttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||| | |||| ||||||||  ||||||||||||||||||||||||||||| ||||    
T  46150711 gatcaaataaaataaatggttgagatttggtgtcaacgaatccgttgacacctagtgt 46150768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 48413366 - 48413333
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  48413366 atttggtgtcaacgaatccgttgacacctggtgt 48413333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 48648250 - 48648217
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  48648250 atttggtgtcaacgaatccgttgacacctggtgt 48648217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 52282411 - 52282451
Alignment:
Q  70 ggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||| ||||||||||||| |||||||||||||||||||||    
T  52282411 ggttgtaatttggtgtcaatgaatccgttgacacctggtgt 52282451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 110
Target Start/End: Original strand, 40872812 - 40872847
Alignment:
Q  75 gaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||| |||||||||||||||||||||    
T  40872812 gaatttggtgtcaatgaatccgttgacacctggtgt 40872847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 108
Target Start/End: Complemental strand, 41458080 - 41458049
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggt 108  Q
    ||||||||||||||||||||||||||||||||    
T  41458080 atttggtgtcaacgaatccgttgacacctggt 41458049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 111
Target Start/End: Complemental strand, 11652340 - 11652306
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgtt 111  Q
    |||||||||||||||||||||||||||||| ||||    
T  11652340 atttggtgtcaacgaatccgttgacacctgatgtt 11652306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 31974707 - 31974665
Alignment:
Q  68 atggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||  ||||||||||||||||||||||||||| ||||||    
T  31974707 atggttgagatttggtgtcaacgaatccgttgacacttggtgt 31974665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 110
Target Start/End: Complemental strand, 37987281 - 37987247
Alignment:
Q  76 aatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||||||||| ||||||||||||||    
T  37987281 aatttggtgtcaacgaatccattgacacctggtgt 37987247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 45081385 - 45081435
Alignment:
Q  53 gatcaatttaaatgaatggttggaatttggtgtcaacgaatccgttgacac 103  Q
    |||||| | |||| ||||||||  |||||||||||||||||||||||||||    
T  45081385 gatcaaataaaataaatggttgagatttggtgtcaacgaatccgttgacac 45081435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 981714 - 981681
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||| ||||||||||||||||    
T  981714 atttggtgtcaacgaattcgttgacacctggtgt 981681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 13477784 - 13477817
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||| ||||||||||||||||    
T  13477784 atttggtgtcaacgaattcgttgacacctggtgt 13477817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 14871200 - 14871167
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||| ||||||||||||||||    
T  14871200 atttggtgtcaacgaattcgttgacacctggtgt 14871167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 20213027 - 20212994
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||| ||||||||||||||||    
T  20213027 atttggtgtcaacgaattcgttgacacctggtgt 20212994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 37988224 - 37988257
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||| ||||||||||||||||    
T  37988224 atttggtgtcaacgaattcgttgacacctggtgt 37988257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 46149676 - 46149643
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||| ||||||||||||||    
T  46149676 atttggtgtcaacgaatccattgacacctggtgt 46149643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 48649179 - 48649212
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||||||| |||||||||||||||    
T  48649179 atttggtgtcaacgaatctgttgacacctggtgt 48649212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 48765076 - 48765109
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||| ||||||||||||||    
T  48765076 atttggtgtcaacgaatccattgacacctggtgt 48765109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 230 - 682
Target Start/End: Complemental strand, 23902599 - 23902147
Alignment:
Q  230 gccacagcatgtgttgtcctttgtaaactcagttttagatctatgccaagaaaaaagtgcatcgtgtatcaggattatagctatgtaaattcatcaaggg 329  Q
    |||| |||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  23902599 gccatagcatgcgttgtcctttgtaaattcagttttagatctatgccaaaaaaaaagtgcatcgtgtatcaggattatagctatgtaaattcatcacggg 23902500  T
Q  330 atgaatgaggttgcaatgaagccatgttgtcaatctaggaaagcttctgttttactgtcatcctcttccatggtttttcaattttatgattctccatatt 429  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23902499 atgaatgaggttgcaatgaagccatgttgtgaatctaggaaagcttctgttttactgtcatcctcttccatggtttttcaattttatgattctccatatt 23902400  T
Q  430 cagaagaacattgatgaattacaaaatcacgtttccataaaattgcccatagagattttccatgtcgattggagaataagaggttattgataaaattgat 529  Q
    |||||||||| ||| ||||| ||||||||||||||||||||||||| |||||||||||||||| ||||| |||||| |||||||||||||||||||||||    
T  23902399 cagaagaacactgacgaatttcaaaatcacgtttccataaaattgctcatagagattttccatatcgatcggagaacaagaggttattgataaaattgat 23902300  T
Q  530 ctccaatctataaattaatgattttaaaacgatgaaattgatacccataaaattaatatccagtcgattggagaaagaatgagaacaaggaggttattgc 629  Q
     |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23902299 atccaatctataaattaatgattttaaaaggataaaattgatacccataaaattaatatccaatcgattggagaaagaatgagaacaaggaggttattgc 23902200  T
Q  630 tcatagaaatttccaatctttaaaataatggttacggtgagagaaaggatgag 682  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23902199 tcatagaaatttccaatctgtaaaataatggttacggtgagagaaaggatgag 23902147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 573 - 682
Target Start/End: Complemental strand, 23890061 - 23889952
Alignment:
Q  573 cccataaaattaatatccagtcgattggagaaagaatgagaacaaggaggttattgctcatagaaatttccaatctttaaaataatggttacggtgagag 672  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  23890061 cccataaaattaatatccaatcgattggagaaagaatgagaacaaggaggttattgctcatagaaatttccaatatgtaaaataatggttacggtgagag 23889962  T
Q  673 aaaggatgag 682  Q
    ||||||||||    
T  23889961 aaaggatgag 23889952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 7668587 - 7668495
Alignment:
Q  18 tgtgaggtttgtaaatgaataaatgtgaacctttagatcaatttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  7668587 tgtgagatttgtaaatgaataaatgtgaacctttagatcaatttaaatgaatggttgagatttggtgtcaacgaatccgttgacacctggtgt 7668495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 326 - 413
Target Start/End: Original strand, 46428389 - 46428478
Alignment:
Q  326 agggatgaatgaggttgcaatgaagccatgttgtc--aatctaggaaagcttctgttttactgtcatcctcttccatggtttttcaattt 413  Q
    ||||||||||||| ||||||||||||||||||||   ||||||| ||||||| ||||||| |||||||||||||||||||||||||||||    
T  46428389 agggatgaatgagattgcaatgaagccatgttgtgcaaatctagaaaagcttatgttttattgtcatcctcttccatggtttttcaattt 46428478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 576 - 681
Target Start/End: Original strand, 46428608 - 46428714
Alignment:
Q  576 ataaaattaatatccagtcgattggagaaagaatgagaacaaggaggttattgctcatagaaatttccaatctttaaaataatggt-tacggtgagagaa 674  Q
    |||||||| ||||| | ||||||||| |||| |||||||||| ||| || ||| || || ||||||||||||| |||| ||||||| ||  |||||||||    
T  46428608 ataaaattgatatctaatcgattggaaaaaggatgagaacaatgagatttttgatcgtataaatttccaatctataaagtaatggtatatagtgagagaa 46428707  T
Q  675 aggatga 681  Q
    |||||||    
T  46428708 aggatga 46428714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 23902665 - 23902598
Alignment:
Q  110 tttcctctacctaacgttctaccgttgagtgtgtt-------atgagaaacaagggaaacaaagtagc 170  Q
    |||||||||||||||||||| ||||||||||||||       ||||||||||||||||||||||||||    
T  23902665 tttcctctacctaacgttctgccgttgagtgtgttatgacttatgagaaacaagggaaacaaagtagc 23902598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 477 - 572
Target Start/End: Original strand, 46428523 - 46428619
Alignment:
Q  477 catagagattttccatgtcgattggagaataagaggttattg---ataaaattgatctccaatctataaattaatgattttaaaacgatgaaattgata 572  Q
    |||||||||||||||| |  |||| |||| ||||||||||||   ||||||||||||||||||||  |||||||||||||| || | || |||||||||    
T  46428523 catagagattttccatat--attgaagaacaagaggttattgctcataaaattgatctccaatcttgaaattaatgattttcaatctataaaattgata 46428619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 47719679 - 47719743
Alignment:
Q  46 acctttagatcaatttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||| || ||||||||| | ||   ||||||||||||||||||||||||||||||||||    
T  47719679 acctttagattaaattaaatgaacgtttaagatttggtgtcaacgaatccgttgacacctggtgt 47719743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 25342552 - 25342510
Alignment:
Q  68 atggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||  ||||||||||||||||||||||||||||||||||    
T  25342552 atggttgagatttggtgtcaacgaatccgttgacacctggtgt 25342510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 25343358 - 25343316
Alignment:
Q  68 atggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||  ||||||||||||||||||||||||||||||||||    
T  25343358 atggttgagatttggtgtcaacgaatccgttgacacctggtgt 25343316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 110
Target Start/End: Original strand, 45099898 - 45099932
Alignment:
Q  76 aatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||||||||||||||||||||||||    
T  45099898 aatttggtgtcaacgaatccgttgacacctggtgt 45099932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 46428242 - 46428200
Alignment:
Q  68 atggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||  ||||||||||||||||||||||||||||||||||    
T  46428242 atggttgagatttggtgtcaacgaatccgttgacacctggtgt 46428200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 13785599 - 13785632
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  13785599 atttggtgtcaacgaatccgttgacacctggtgt 13785632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 19068377 - 19068434
Alignment:
Q  53 gatcaatttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||| | |||| || ||||| |||||||||||||||||| ||||||||||||||||    
T  19068377 gatcaaataaaatcaacggttgaaatttggtgtcaacgaatacgttgacacctggtgt 19068434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 25599068 - 25599035
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  25599068 atttggtgtcaacgaatccgttgacacctggtgt 25599035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 26636149 - 26636116
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  26636149 atttggtgtcaacgaatccgttgacacctggtgt 26636116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 30660639 - 30660606
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  30660639 atttggtgtcaacgaatccgttgacacctggtgt 30660606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 30661461 - 30661494
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  30661461 atttggtgtcaacgaatccgttgacacctggtgt 30661494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 37949651 - 37949618
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  37949651 atttggtgtcaacgaatccgttgacacctggtgt 37949618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 37950473 - 37950506
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  37950473 atttggtgtcaacgaatccgttgacacctggtgt 37950506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 43065122 - 43065155
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  43065122 atttggtgtcaacgaatccgttgacacctggtgt 43065155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 3029197 - 3029237
Alignment:
Q  70 ggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||| ||||||||||||||||| ||||||||||||||||    
T  3029197 ggttgggatttggtgtcaacgaattcgttgacacctggtgt 3029237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 3903330 - 3903378
Alignment:
Q  62 aaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||| |||  |||||||||||||| |||||||||||||||||||    
T  3903330 aaatgaatgattgatatttggtgtcaacggatccgttgacacctggtgt 3903378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 24389607 - 24389655
Alignment:
Q  62 aaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||| ||||||||  |||||||||||| |||||||||||||||||||||    
T  24389607 aaataaatggttgagatttggtgtcaatgaatccgttgacacctggtgt 24389655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 24719396 - 24719348
Alignment:
Q  62 aaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||| |||  |||||||||||||||||||||||||| |||||||    
T  24719396 aaatgaatgattgatatttggtgtcaacgaatccgttgacatctggtgt 24719348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 18977072 - 18977033
Alignment:
Q  60 ttaaatgaatggttggaatttggtgtcaacgaatccgttg 99  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  18977072 ttaaatgaatggttgagatttggtgtcaacgaatccgttg 18977033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 111
Target Start/End: Complemental strand, 31277470 - 31277435
Alignment:
Q  76 aatttggtgtcaacgaatccgttgacacctggtgtt 111  Q
    |||||||||||||||||| |||||||||||||||||    
T  31277470 aatttggtgtcaacgaattcgttgacacctggtgtt 31277435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 36379661 - 36379720
Alignment:
Q  45 aacctttagatcaatttaaatgaatggttggaatttggtgtcaacgaatccgttgacacc 104  Q
    |||||||||||||| | |||| || || |  |||||||||||||||||||||||||||||    
T  36379661 aacctttagatcaaataaaatcaacggataaaatttggtgtcaacgaatccgttgacacc 36379720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 37395495 - 37395538
Alignment:
Q  67 aatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||| || |||||||||| ||||||||||||||||||||||||    
T  37395495 aatggatgaaatttggtgttaacgaatccgttgacacctggtgt 37395538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 111
Target Start/End: Complemental strand, 3028020 - 3027986
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgtt 111  Q
    ||||||||||||||||| |||||||||||||||||    
T  3028020 atttggtgtcaacgaattcgttgacacctggtgtt 3027986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 18977766 - 18977808
Alignment:
Q  68 atggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||  ||||||||| ||||||||||||||||||||||||    
T  18977766 atggttgagatttggtgttaacgaatccgttgacacctggtgt 18977808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 37706483 - 37706441
Alignment:
Q  68 atggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||| |||||||||| |||||||||||||| |||||||||    
T  37706483 atggttgaaatttggtgttaacgaatccgttgatacctggtgt 37706441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 1417654 - 1417621
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||| ||||||||||||||||    
T  1417654 atttggtgtcaacgaattcgttgacacctggtgt 1417621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 3772532 - 3772565
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||| ||||||||||||||||    
T  3772532 atttggtgtcaacgaatacgttgacacctggtgt 3772565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 19067683 - 19067650
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||| ||||||    
T  19067683 atttggtgtcaacgaatccgttgacacgtggtgt 19067650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 24453732 - 24453765
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||| ||||||||||||||||||||    
T  24453732 atttggtgtcaacaaatccgttgacacctggtgt 24453765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 26636866 - 26636899
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||| ||||    
T  26636866 atttggtgtcaacgaatccgttgacaccttgtgt 26636899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 27948492 - 27948459
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||| ||||||||||||||||    
T  27948492 atttggtgtcaacgaattcgttgacacctggtgt 27948459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 31278160 - 31278193
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||||||||||||||| |||||||    
T  31278160 atttggtgtcaacgaatccgttgacatctggtgt 31278193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 38225981 - 38226014
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||| ||||||||||||||||    
T  38225981 atttggtgtcaacgaattcgttgacacctggtgt 38226014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 45162015 - 45161982
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||||||||||| |||||||||||    
T  45162015 atttggtgtcaacgaatccgttaacacctggtgt 45161982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 326 - 413
Target Start/End: Complemental strand, 47785545 - 47785456
Alignment:
Q  326 agggatgaatgaggttgcaatgaagccatgttgtc--aatctaggaaagcttctgttttactgtcatcctcttccatggtttttcaattt 413  Q
    ||||||||||||| ||||||||||||||||||||   ||||||  ||||||| ||||||| |||||||||||||||||||||||||||||    
T  47785545 agggatgaatgagattgcaatgaagccatgttgtgcaaatctataaaagcttatgttttattgtcatcctcttccatggtttttcaattt 47785456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 19080449 - 19080399
Alignment:
Q  60 ttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19080449 ttaaatgaatggttgaaatttggtgtcaacgaatccgttgacacctggtgt 19080399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 576 - 681
Target Start/End: Complemental strand, 47785326 - 47785220
Alignment:
Q  576 ataaaattaatatccagtcgattggagaaagaatgagaacaaggaggttattgctcatagaaatttccaatctttaaaataatggt-tacggtgagagaa 674  Q
    |||||||| ||||  | ||||||||| |||| |||||||||| ||| || ||| || || ||||||||||||| |||| ||||||| ||| |||||||||    
T  47785326 ataaaattgatatataatcgattggaaaaaggatgagaacaatgagatttttgatcgtataaatttccaatctataaagtaatggtatacagtgagagaa 47785227  T
Q  675 aggatga 681  Q
    |||||||    
T  47785226 aggatga 47785220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 53733728 - 53733770
Alignment:
Q  68 atggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  53733728 atggttgaaatttggtgtcaacgaatccgttgacacctggtgt 53733770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 477 - 572
Target Start/End: Complemental strand, 47785411 - 47785315
Alignment:
Q  477 catagagattttccatgtcgattggagaataagaggttattg---ataaaattgatctccaatctataaattaatgattttaaaacgatgaaattgata 572  Q
    |||||||||||||||| |  |||| |||| ||||||||||||   ||||||||||||||||||||  |||||||||||||| || | || |||||||||    
T  47785411 catagagattttccatat--attgaagaacaagaggttattgctcataaaattgatctccaatcttgaaattaatgattttcaatctataaaattgata 47785315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 55976930 - 55976994
Alignment:
Q  46 acctttagatcaatttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||| || ||||||||| | ||   ||||||||||||||||||||||||||||||||||    
T  55976930 acctttagattaaattaaatgaacgtttaagatttggtgtcaacgaatccgttgacacctggtgt 55976994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 75 - 110
Target Start/End: Complemental strand, 2444421 - 2444386
Alignment:
Q  75 gaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||||    
T  2444421 gaatttggtgtcaacgaatccgttgacacctggtgt 2444386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 44469573 - 44469506
Alignment:
Q  43 tgaacctttagatcaatttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||||||  ||||||||||     ||||||||||||||||| ||||||||||||||||    
T  44469573 tgaacctttagatcaatacaaatgaatggacatgatttggtgtcaacgaattcgttgacacctggtgt 44469506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 110
Target Start/End: Complemental strand, 19550334 - 19550300
Alignment:
Q  76 aatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||||||||||||||||||||||||    
T  19550334 aatttggtgtcaacgaatccgttgacacctggtgt 19550300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 47785796 - 47785838
Alignment:
Q  68 atggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||  ||||||||||||||||||||||||||||||||||    
T  47785796 atggttgagatttggtgtcaacgaatccgttgacacctggtgt 47785838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 16903649 - 16903682
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  16903649 atttggtgtcaacgaatccgttgacacctggtgt 16903682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 20774186 - 20774219
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  20774186 atttggtgtcaacgaatccgttgacacctggtgt 20774219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 30573715 - 30573748
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  30573715 atttggtgtcaacgaatccgttgacacctggtgt 30573748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 31329699 - 31329756
Alignment:
Q  53 gatcaatttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||| | |||| ||||||| | ||||||||| ||||||||||||||||||||||||    
T  31329699 gatcaaatgaaatcaatggttaggatttggtgttaacgaatccgttgacacctggtgt 31329756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 47688485 - 47688518
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  47688485 atttggtgtcaacgaatccgttgacacctggtgt 47688518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 52871345 - 52871312
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  52871345 atttggtgtcaacgaatccgttgacacctggtgt 52871312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 53772854 - 53772821
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  53772854 atttggtgtcaacgaatccgttgacacctggtgt 53772821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 55976213 - 55976180
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  55976213 atttggtgtcaacgaatccgttgacacctggtgt 55976180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 53147925 - 53147885
Alignment:
Q  70 ggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||| |||||||||||||||||||||||||| |||||||    
T  53147925 ggttgggatttggtgtcaacgaatccgttgacatctggtgt 53147885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 110
Target Start/End: Original strand, 24158796 - 24158859
Alignment:
Q  47 cctttagatcaatttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||| | |||| || ||||   |||||||||||||||||| |||||||||||||||    
T  24158796 cctttagatcaaatgaaatcaacggttaagatttggtgtcaacgaatctgttgacacctggtgt 24158859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 108
Target Start/End: Complemental strand, 32088866 - 32088835
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggt 108  Q
    ||||||||||||||||||||||||||||||||    
T  32088866 atttggtgtcaacgaatccgttgacacctggt 32088835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 42880997 - 42880922
Alignment:
Q  35 aataaatgtgaacctttagatcaatttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||  ||||||||||||  ||||||||||     |||||||||||||||||| |||| ||||||||||    
T  42880997 aataaatgtgagtctttagatcaatacaaatgaatggacatgatttggtgtcaacgaatctgttgtcacctggtgt 42880922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 106
Target Start/End: Complemental strand, 50184477 - 50184446
Alignment:
Q  75 gaatttggtgtcaacgaatccgttgacacctg 106  Q
    ||||||||||||||||||||||||||||||||    
T  50184477 gaatttggtgtcaacgaatccgttgacacctg 50184446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 107
Target Start/End: Original strand, 3654521 - 3654551
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctgg 107  Q
    |||||||||||||||||||||||||||||||    
T  3654521 atttggtgtcaacgaatccgttgacacctgg 3654551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 110
Target Start/End: Original strand, 16903677 - 16903707
Alignment:
Q  80 tggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||||||||||||||||||||    
T  16903677 tggtgtcaacgaatccgttgacacctggtgt 16903707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 599307 - 599340
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||||||||||||||||| |||||    
T  599307 atttggtgtcaacgaatccgttgacaccaggtgt 599340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 106
Target Start/End: Complemental strand, 5046031 - 5046002
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctg 106  Q
    ||||||||||||||||||||||||||||||    
T  5046031 atttggtgtcaacgaatccgttgacacctg 5046002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 8248526 - 8248559
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||||||||||||||| |||||||    
T  8248526 atttggtgtcaacgaatccgttgacatctggtgt 8248559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 8266191 - 8266224
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||||||||||||||| |||||||    
T  8266191 atttggtgtcaacgaatccgttgacatctggtgt 8266224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 9365822 - 9365855
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||| |||||||||||||||||||||    
T  9365822 atttggtgtcaatgaatccgttgacacctggtgt 9365855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 11938758 - 11938725
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||| ||||||||||||||||    
T  11938758 atttggtgtcaacgaattcgttgacacctggtgt 11938725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 24551929 - 24551962
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||| ||||||||||||||||||||    
T  24551929 atttggtgtcaacaaatccgttgacacctggtgt 24551962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 26147038 - 26147071
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||| ||||||||||||||||    
T  26147038 atttggtgtcaacgaattcgttgacacctggtgt 26147071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 42882687 - 42882720
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||||||||||||||| |||||||    
T  42882687 atttggtgtcaacgaatccgttgacatctggtgt 42882720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 43146654 - 43146687
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||| |||||||||||||||||||||    
T  43146654 atttggtgtcaaggaatccgttgacacctggtgt 43146687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 53732482 - 53732449
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||| |||||||||||||||||||||||||||||    
T  53732482 atttagtgtcaacgaatccgttgacacctggtgt 53732449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 106
Target Start/End: Original strand, 53773592 - 53773621
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctg 106  Q
    ||||||||||||||||||||||||||||||    
T  53773592 atttggtgtcaacgaatccgttgacacctg 53773621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 55000734 - 55000701
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||||||||||||||| |||||||    
T  55000734 atttggtgtcaacgaatccgttgacatctggtgt 55000701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 55001446 - 55001479
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||| |||||||||||||||||||||||||||||    
T  55001446 atttagtgtcaacgaatccgttgacacctggtgt 55001479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 26672 - 26605
Alignment:
Q  43 tgaacctttagatcaatttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||| |||| |||||||  ||||||||||||||||||||||||||||||||||    
T  26672 tgaacctttagatcaattttaatggatggttgtgatttggtgtcaacgaatccgttgacacctggtgt 26605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 6584184 - 6584265
Alignment:
Q  29 taaatgaataaatgtgaacctttagatcaatttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||| ||||| | ||||||||||||||||||| |||| |||||||  ||||||||||||||||||||||||||| ||||||    
T  6584184 taaataaataattatgaacctttagatcaatttcaatggatggttgtgatttggtgtcaacgaatccgttgacacttggtgt 6584265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 12725603 - 12725653
Alignment:
Q  60 ttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  12725603 ttaaatgaatggttgggatttggtgtcaacaaatccgttgacacctggtgt 12725653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 36237702 - 36237645
Alignment:
Q  53 gatcaatttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||| | |||| |||||||| ||||||||||||| |||||||||||||||||||||    
T  36237702 gatcaaataaaataaatggttgaaatttggtgtcaatgaatccgttgacacctggtgt 36237645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 1297119 - 1297161
Alignment:
Q  68 atggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||  ||||||||||||||||||||||||||||||||||    
T  1297119 atggttgagatttggtgtcaacgaatccgttgacacctggtgt 1297161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 8669189 - 8669235
Alignment:
Q  65 tgaatggttggaatttggtgtcaacgaatccgttgacacctggtgtt 111  Q
    ||||| ||||| |||||||||||||||||| ||||||||||||||||    
T  8669189 tgaattgttgggatttggtgtcaacgaatctgttgacacctggtgtt 8669235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 9275642 - 9275600
Alignment:
Q  68 atggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||  ||||||||||||||||||||||||||||||||||    
T  9275642 atggttgagatttggtgtcaacgaatccgttgacacctggtgt 9275600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 29719510 - 29719460
Alignment:
Q  60 ttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||| | |||||  ||||||||||||||||||||||||||||||||||    
T  29719510 ttaaatggagggttgagatttggtgtcaacgaatccgttgacacctggtgt 29719460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 111
Target Start/End: Complemental strand, 40252069 - 40252035
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgtt 111  Q
    |||||||||||||||||||||||||||||||||||    
T  40252069 atttggtgtcaacgaatccgttgacacctggtgtt 40252035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 11007290 - 11007245
Alignment:
Q  65 tgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||  |||| |||||||||||||||||||||||||||||    
T  11007290 tgaatggttgagatttagtgtcaacgaatccgttgacacctggtgt 11007245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 11750304 - 11750271
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  11750304 atttggtgtcaacgaatccgttgacacctggtgt 11750271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 16692979 - 16693012
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  16692979 atttggtgtcaacgaatccgttgacacctggtgt 16693012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 26588978 - 26589055
Alignment:
Q  33 tgaataaatgtgaacctttagatcaatttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||| |||||| |||||||||||||| | |||| || ||||   |||||| |||||||||||||||||||| ||||||    
T  26588978 tgaacaaatgtcaacctttagatcaaatgaaatcaacggttaatatttggagtcaacgaatccgttgacacttggtgt 26589055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 29513152 - 29513185
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  29513152 atttggtgtcaacgaatccgttgacacctggtgt 29513185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 1296435 - 1296393
Alignment:
Q  68 atggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||  ||||||||||||||||| ||||||||||||||||    
T  1296435 atggttgagatttggtgtcaacgaattcgttgacacctggtgt 1296393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 9276326 - 9276368
Alignment:
Q  68 atggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||  ||||||||||||||||| ||||||||||||||||    
T  9276326 atggttgagatttggtgtcaacgaattcgttgacacctggtgt 9276368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 24933900 - 24933850
Alignment:
Q  60 ttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||||  |||||||||||| |||| |||||||||| |||||    
T  24933900 ttaaatgaatggttgagatttggtgtcaatgaattcgttgacaccaggtgt 24933850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 110
Target Start/End: Complemental strand, 27177960 - 27177926
Alignment:
Q  76 aatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||||||| ||||||||||||||||    
T  27177960 aatttggtgtcaacgaattcgttgacacctggtgt 27177926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 34812832 - 34812894
Alignment:
Q  48 ctttagatcaatttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||| |||||| | |||| ||||||| | ||||||||| |||||||||||||||| |||||||    
T  34812832 ctttggatcaaatgaaatcaatggttaggatttggtgttaacgaatccgttgacaactggtgt 34812894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 8542553 - 8542586
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||| ||||    
T  8542553 atttggtgtcaacgaatccgttgacacctagtgt 8542586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 9540378 - 9540345
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||| ||||||||||||||||    
T  9540378 atttggtgtcaacgaattcgttgacacctggtgt 9540345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 15902887 - 15902920
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||| |||||||||||||||||||||||||||||    
T  15902887 attttgtgtcaacgaatccgttgacacctggtgt 15902920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 106
Target Start/End: Complemental strand, 18820479 - 18820450
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctg 106  Q
    ||||||||||||||||||||||||||||||    
T  18820479 atttggtgtcaacgaatccgttgacacctg 18820450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 22301875 - 22301908
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||| ||||||||||||||||    
T  22301875 atttggtgtcaacgaattcgttgacacctggtgt 22301908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 106
Target Start/End: Original strand, 22560573 - 22560602
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctg 106  Q
    ||||||||||||||||||||||||||||||    
T  22560573 atttggtgtcaacgaatccgttgacacctg 22560602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 29559425 - 29559458
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||| ||||||||||||||||    
T  29559425 atttggtgtcaacgaattcgttgacacctggtgt 29559458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 42182620 - 42182653
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||| ||||||||||||||    
T  42182620 atttggtgtcaacgaatcccttgacacctggtgt 42182653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 18227825 - 18227751
Alignment:
Q  29 taaatgaataaatgtgaacctttagatcaatttaaatgaatggttggaatttggtgtcaacgaatccgttgacac 103  Q
    ||||| ||||| | ||||||||||||||||||| |||| |||||||  |||||||||||||||||||||||||||    
T  18227825 taaataaataattatgaacctttagatcaatttcaatggatggttgtgatttggtgtcaacgaatccgttgacac 18227751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 8488515 - 8488482
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  8488515 atttggtgtcaacgaatccgttgacacctggtgt 8488482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 10171322 - 10171289
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  10171322 atttggtgtcaacgaatccgttgacacctggtgt 10171289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 19311832 - 19311865
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  19311832 atttggtgtcaacgaatccgttgacacctggtgt 19311865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 19323029 - 19322996
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  19323029 atttggtgtcaacgaatccgttgacacctggtgt 19322996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 26529518 - 26529551
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  26529518 atttggtgtcaacgaatccgttgacacctggtgt 26529551  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 505598 - 505554
Alignment:
Q  62 aaatgaatggttggaatttggtgtcaacgaatccgttgacacctg 106  Q
    |||| ||||||| |||||||||||||||||||| |||||||||||    
T  505598 aaataaatggttagaatttggtgtcaacgaatctgttgacacctg 505554  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 19323763 - 19323805
Alignment:
Q  68 atggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||  ||||||||||||||||| ||||||||||||||||    
T  19323763 atggttgagatttggtgtcaacgaattcgttgacacctggtgt 19323805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 106
Target Start/End: Complemental strand, 1367014 - 1366985
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctg 106  Q
    ||||||||||||||||||||||||||||||    
T  1367014 atttggtgtcaacgaatccgttgacacctg 1366985  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 9441283 - 9441250
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||| |||||||||||||||||||    
T  9441283 atttggtgtcaacggatccgttgacacctggtgt 9441250  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 10171971 - 10172004
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||| ||||||||||||||||    
T  10171971 atttggtgtcaacgaatgcgttgacacctggtgt 10172004  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 26528869 - 26528836
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||| ||||||||||||||||    
T  26528869 atttggtgtcaacgaatgcgttgacacctggtgt 26528836  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 33436279 - 33436312
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||||||||||||||| |||||||    
T  33436279 atttggtgtcaacgaatccgttgacatctggtgt 33436312  T

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Target: scaffold1213 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold1213
Description:

Target: scaffold1213; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 1976 - 1917
Alignment:
Q  43 tgaacctttagatcaatttaaatgaatggttggaatttggtgtcaacgaatccgttgaca 102  Q
    ||||||||||||||||||| ||| ||| ||||  ||||||||||||||||||||||||||    
T  1976 tgaacctttagatcaattttaataaatagttgtgatttggtgtcaacgaatccgttgaca 1917  T

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Target: scaffold0012 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 181090 - 181023
Alignment:
Q  43 tgaacctttagatcaatttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||| || | |||||||   ||| |||||||||||||||||||||||||||||    
T  181090 tgaacctttagatcaatttgaaaggatggttgtggttttgtgtcaacgaatccgttgacacctggtgt 181023  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 8373654 - 8373731
Alignment:
Q  33 tgaataaatgtgaacctttagatcaatttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||| |||||||||||||||||||||   |||| || ||||   ||||||||||||||||||||||||||| ||||||    
T  8373654 tgaacaaatgtgaacctttagatcaaacgaaatcaacggttaatatttggtgtcaacgaatccgttgacacttggtgt 8373731  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 63 - 110
Target Start/End: Complemental strand, 41974701 - 41974654
Alignment:
Q  63 aatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||| ||  ||||||||||||||||||||||||||||||||||    
T  41974701 aatgaatggctgagatttggtgtcaacgaatccgttgacacctggtgt 41974654  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 38576298 - 38576340
Alignment:
Q  68 atggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||  ||||||||||||||||||||||||||||||||||    
T  38576298 atggttgagatttggtgtcaacgaatccgttgacacctggtgt 38576340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 15057463 - 15057410
Alignment:
Q  18 tgtgaggtttgtaaatgaataaatgtgaacctttagatcaatttaaatgaatgg 71  Q
    |||||||||||||| ||||||||||||||  |||||||| | ||||||||||||    
T  15057463 tgtgaggtttgtaagtgaataaatgtgaaattttagatccacttaaatgaatgg 15057410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 32414529 - 32414562
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  32414529 atttggtgtcaacgaatccgttgacacctggtgt 32414562  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 11686273 - 11686241
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtg 109  Q
    |||||||||||||||||||||||||||||||||    
T  11686273 atttggtgtcaacgaatccgttgacacctggtg 11686241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 107
Target Start/End: Complemental strand, 22320421 - 22320391
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctgg 107  Q
    |||||||||||||||||||||||||||||||    
T  22320421 atttggtgtcaacgaatccgttgacacctgg 22320391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 3043970 - 3044003
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||| ||||||||||||||||    
T  3043970 atttggtgtcaacgaattcgttgacacctggtgt 3044003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 106
Target Start/End: Original strand, 3165127 - 3165156
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctg 106  Q
    ||||||||||||||||||||||||||||||    
T  3165127 atttggtgtcaacgaatccgttgacacctg 3165156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 8372960 - 8372927
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||||||||||||||||| |||||    
T  8372960 atttggtgtcaacgaatccgttgacaccaggtgt 8372927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 9197142 - 9197109
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||| ||||||||||||||||    
T  9197142 atttggtgtcaacgaattcgttgacacctggtgt 9197109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 26654383 - 26654416
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||| ||||||||||||||    
T  26654383 atttggtgtcaacgaatccattgacacctggtgt 26654416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 28929892 - 28929859
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||||||||||||||| |||||||    
T  28929892 atttggtgtcaacgaatccgttgacatctggtgt 28929859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 31602063 - 31602030
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||| ||||||||||||||||    
T  31602063 atttggtgtcaacgaattcgttgacacctggtgt 31602030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 31641558 - 31641525
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||| ||||||||||||||    
T  31641558 atttggtgtcaacgaatccattgacacctggtgt 31641525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 110
Target Start/End: Original strand, 22075 - 22109
Alignment:
Q  76 aatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||||||||||||||||||||||||    
T  22075 aatttggtgtcaacgaatccgttgacacctggtgt 22109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 15855 - 15897
Alignment:
Q  68 atggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||  ||||||||||||||||| ||||||||||||||||    
T  15855 atggttgagatttggtgtcaacgaattcgttgacacctggtgt 15897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 39942 - 39909
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  39942 atttggtgtcaacgaatccgttgacacctggtgt 39909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 1640 - 1600
Alignment:
Q  70 ggttggaatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||| ||||||||||||||||| ||||||||||||||||    
T  1640 ggttgggatttggtgtcaacgaattcgttgacacctggtgt 1600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 110
Target Start/End: Original strand, 5384 - 5418
Alignment:
Q  76 aatttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||| ||||||||||||||||||||    
T  5384 aatttggtgtcaacaaatccgttgacacctggtgt 5418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2007 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold2007
Description:

Target: scaffold2007; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 797 - 764
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||||||||||||| |||||||||    
T  797 atttggtgtcaacgaatccgttgaaacctggtgt 764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 23734 - 23767
Alignment:
Q  77 atttggtgtcaacgaatccgttgacacctggtgt 110  Q
    |||||||||||||||||||||||||| |||||||    
T  23734 atttggtgtcaacgaatccgttgacaactggtgt 23767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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