View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17640_high_30 (Length: 330)
Name: NF17640_high_30
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_high_30 |
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| [»] chr1 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 330
Target Start/End: Complemental strand, 48472484 - 48472172
Alignment:
| Q |
13 |
aatatgtggcagttgcagcaaagtgagtgaattgatagttgagacagtaacgttgtgatacnnnnnnnnnnnnnnnnncataggagattgatccaaaaat |
112 |
Q |
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| T |
48472484 |
aatatgttgcagttgcagcaaagtgagtgaattgatagttgagacagtaacgttgtgatacaaaaaaaaaaaa-----cataggagattgatccaaaaat |
48472390 |
T |
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| Q |
113 |
aacttcatctaacagtcataacgaaacnnnnnnnnctacagaacaacaaccttcatccgcaattcgagcaagtgaaatattgacattagcattttgatgt |
212 |
Q |
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| T |
48472389 |
aacttcatctaacagtcataacgaaacaaaaaaaactacagaacaacaaccttcatccgcaattcgagcaagtgaaatattgacattagcattttgatgt |
48472290 |
T |
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| Q |
213 |
atcaaattacttggaatgtaattaaatttaggaagatcctcacttccagtttcatcaaataatgagatttcaacattttatgaaccttttgttatgtcat |
312 |
Q |
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| T |
48472289 |
atcaaattacttggaatgtaattaaatttaggaagatcctcacttccagtttcatcaaataatgagatttcaacattttatgaaccttttgttatgtcgt |
48472190 |
T |
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| Q |
313 |
tgacatatcgaaaggatt |
330 |
Q |
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| T |
48472189 |
tatcatatcgaaaggatt |
48472172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 165 - 330
Target Start/End: Original strand, 35687416 - 35687581
Alignment:
| Q |
165 |
tcatccgcaattcgagcaagtgaaatattgacattagcattttgatgtatcaaattacttggaatgtaattaaatttaggaagatcctcacttccagttt |
264 |
Q |
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| T |
35687416 |
tcatccgcaatccgagcaagtgaaatattaacatttgcactttgatacagtgtgttacatggaatgtaattaaattttggaaaatcctcactgttggttt |
35687515 |
T |
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| Q |
265 |
catcaaataatgagatttcaacattttatgaaccttttgttatgtcattgacatatcgaaaggatt |
330 |
Q |
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| T |
35687516 |
catctaataatgatattttaatgttttcagaaccttttgtaatgtcttcgacatatcgaaaggatt |
35687581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 330
Target Start/End: Complemental strand, 44972192 - 44972024
Alignment:
| Q |
165 |
tcatccgcaattcgagcaagtgaaatattgacattagcattttgatgtatcaaattacttggaatgtaattaaatttaggaagatcctcacttccagttt |
264 |
Q |
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| T |
44972192 |
tcatccgtaatccgagcaagtgaaatattaacatttgcactttgatacattgtgttacatggaatataattaaattttggaaaatcctcactgttggttt |
44972093 |
T |
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| Q |
265 |
catcaaataatgagatttcaacattttat---gaaccttttgttatgtcattgacatatcgaaaggatt |
330 |
Q |
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| T |
44972092 |
cctctaataatgatattttaatgtttttttcagaaccttttgttatgtcttcgacatatcgaaaggatt |
44972024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 165 - 330
Target Start/End: Original strand, 7724120 - 7724285
Alignment:
| Q |
165 |
tcatccgcaattcgagcaagtgaaatattgacattagcattttgatgtatcaaattacttggaatgtaattaaatttaggaagatcctcacttccagttt |
264 |
Q |
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|||||| |||| ||||||||||||||||| ||||| ||| |||||| || |||| |||||||||||||||||| ||| ||||||||| |||| |
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| T |
7724120 |
tcatccacaatccgagcaagtgaaatattaacatttgcactttgatacattgttttacatggaatgtaattaaattttagaatatcctcactgttggttt |
7724219 |
T |
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| Q |
265 |
catcaaataatgagatttcaacattttatgaaccttttgttatgtcattgacatatcgaaaggatt |
330 |
Q |
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| T |
7724220 |
cgtctaataatgatattttaatgttttccgaaccttttgttatgtcttcgacatatcaaaatgatt |
7724285 |
T |
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