View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17640_high_38 (Length: 271)
Name: NF17640_high_38
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_high_38 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 253
Target Start/End: Complemental strand, 8420712 - 8420464
Alignment:
| Q |
8 |
gaagaatatatgagaaatctctttgacaaccttgttgtaaatcatgtttacaatgatgatataatcaatttaaaatatcagattgttcattcctgattcc |
107 |
Q |
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| T |
8420712 |
gaagaatatatgagaaatctctttgacaaccttgttgtaaatcatgtttacaatgatgatataatcaatttaaaatatcacattgttcattcctgattcc |
8420613 |
T |
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| Q |
108 |
attgccaaatagattaatgccccggtgagcagagctttcacaaagtttcctttgataatgc--ctcagctgagagaccattagagtaagtcccattcatg |
205 |
Q |
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| T |
8420612 |
attgccaaatagattaatgccccggtgagcagagctttcacaaagtttcctttgataatgcctctcagctgagagaccattagagtaagtcccattcatg |
8420513 |
T |
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| Q |
206 |
ttaactatcaca-nnnnnnnnnaggaataatactggtgttattttatat |
253 |
Q |
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| T |
8420512 |
ttaactatcacattttttttttaggaataatactggtgttattttatat |
8420464 |
T |
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