View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17640_high_47 (Length: 247)
Name: NF17640_high_47
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_high_47 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 34770581 - 34770814
Alignment:
| Q |
1 |
tgatccaaaaactattttacattgtcttgataggatgtccatacacgatggttttgtggctcaatga---tgtcccaatggaagatagtattgatttctt |
97 |
Q |
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| T |
34770581 |
tgatccaaaaactactttacattgtcttgataggatgtccatacgcgatggttttgtggctcaatgatgatgtcccaatggaagatagtattgatttctt |
34770680 |
T |
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| Q |
98 |
tgttggtaatgtgatgcaaagggtagaattaaattgatcaaagccaactaggagtgtattatagtcagatcgaaaagaattttgagcagtcatgtgttgt |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34770681 |
tgttggtaatgtgatgcaaagggtagaattaaattgatcaaagccaactaggagtgtattatagttagatcgaaaagaattttgagcagtcatgtgttgt |
34770780 |
T |
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| Q |
198 |
gagatcttcaaagtcgtggattgatgtgcaactt |
231 |
Q |
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| T |
34770781 |
gagatcttcaaagtcgtggattgatgtgcaactt |
34770814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 34781526 - 34781759
Alignment:
| Q |
1 |
tgatccaaaaactattttacattgtcttgataggatgtccatacacgatggttttgtggctcaatga---tgtcccaatggaagatagtattgatttctt |
97 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34781526 |
tgatccaaaaactactttacattgtcttgataggatgtccatacgcgatggttttgtggctcaatgatgatgtcccaatggaagatagtattgatttctt |
34781625 |
T |
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| Q |
98 |
tgttggtaatgtgatgcaaagggtagaattaaattgatcaaagccaactaggagtgtattatagtcagatcgaaaagaattttgagcagtcatgtgttgt |
197 |
Q |
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| T |
34781626 |
tgttggtaatgtgatgcaaagggtagaattaaattgatcaaagccaactaggagtgtattatagttagatcgaaaagaattttgagcagtcatgtgttgt |
34781725 |
T |
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| Q |
198 |
gagatcttcaaagtcgtggattgatgtgcaactt |
231 |
Q |
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| T |
34781726 |
gagatcttcaaagtcgtggattgatgtgcaactt |
34781759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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