View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17640_high_50 (Length: 236)
Name: NF17640_high_50
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_high_50 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 48471728 - 48471518
Alignment:
| Q |
17 |
agacccaccaccgattccaagagccacccctaaaccattgatttcaccctaaatcttttctactcatcatcttcatcttcatcctcttcccaatccccca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||| ||||||||||||||||||||||| |
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| T |
48471728 |
agacccaccaccgattccaagagccacccctaaaccattgatttcagcctaaatcttttctagtcaccatcttcatattcatcctcttcccaatccccca |
48471629 |
T |
|
| Q |
117 |
ccggnnnnnnnnn------caatttcattatcttctcaaatccaaaagttatagagcatatatcttggctattgtccctaaatcaaatgacctctaaccc |
210 |
Q |
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||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48471628 |
ccgaaaaaaaaaaaaaaaacaatttcattatcttctcaaatccaaaagttacagagcatatatcttggctattgtccctaaatcaaatgacctctaaccc |
48471529 |
T |
|
| Q |
211 |
attttctaaat |
221 |
Q |
| |
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||||||||||| |
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| T |
48471528 |
attttctaaat |
48471518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 53145386 - 53145186
Alignment:
| Q |
17 |
agacccaccaccgattccaagagccacccctaaaccattgatttcaccctaaatcttttctactcatcatcttcatcttcatcctcttcccaatccccca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
53145386 |
agacccaccaccgattccaagagccacccctaaaccattgatttcagcctaaatcttttctgctcatcatcttcatc------ctcttcccaatccccca |
53145293 |
T |
|
| Q |
117 |
ccggnnnnnnnnn--caatttcattatcttctcaaatccaaaagttatagagcatatatcttggctattgtccctaaatcaaatgacctctaacccattt |
214 |
Q |
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|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
53145292 |
cccaaaaaaaaaaaacaatttcattatcttctcaaatccaaaagttaaagagcatatatcttggctattgtccctaaatcaaatgacctttaacccattt |
53145193 |
T |
|
| Q |
215 |
tctaaat |
221 |
Q |
| |
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||||||| |
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| T |
53145192 |
tctaaat |
53145186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 55010987 - 55011189
Alignment:
| Q |
17 |
agacccaccaccgattccaagagccacccctaaaccattgatttcaccctaaatcttttctactcatcatcttcatcttcatcctcttcccaatccccca |
116 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
55010987 |
agacccaccaccgattccaagagtcaaccctaaaccattgatttcagcctaaatcttttctgctcatcatcttcatc------ctcttcccaatccccca |
55011080 |
T |
|
| Q |
117 |
ccggnnnnnnnnn----caatttcattatcttctcaaatccaaaagttatagagcatatatcttggctattgtccctaaatcaaatgacctctaacccat |
212 |
Q |
| |
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|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
55011081 |
cccaaaaaaaaaaaaaacaatttcattatcttctcaaatccaaaagttaaagagcatatatcttggctattgttcctaaatcaaatgacctttaacccat |
55011180 |
T |
|
| Q |
213 |
tttctaaat |
221 |
Q |
| |
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||||||||| |
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| T |
55011181 |
tttctaaat |
55011189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 31111300 - 31111102
Alignment:
| Q |
17 |
agacccaccaccgattccaagagccacccctaaaccattgatttcaccctaaatcttttctactcatcatcttcatcttcatcctcttcccaatccccca |
116 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||| |||||||||| |
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| T |
31111300 |
agacccaccaccgattccaagaaccacccctaaaccattgatttcagcctaaatcttttctgctcatcatcttcatc------ctcttctcaatccccca |
31111207 |
T |
|
| Q |
117 |
ccggnnnnnnnnn------caatttcattatcttctcaaatccaaaagttatagagcatatatcttggctattgtccctaaatcaaatgacctctaaccc |
210 |
Q |
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|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31111206 |
cccaaaaaaaaaaaaaaaacaatttcattatcttctcaaatccaaaagttaaagagcatatatcttggctattgtccctaaatcaaatgacctttaaccc |
31111107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 136 - 221
Target Start/End: Complemental strand, 39318146 - 39318061
Alignment:
| Q |
136 |
cattatcttctcaaatccaaaagttatagagcatatatcttggctattgtccctaaatcaaatgacctctaacccattttctaaat |
221 |
Q |
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|||||||||||||||||||||||||| | ||||| |||||||||||||||||| ||||||||||| || ||||||||||||||||| |
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| T |
39318146 |
cattatcttctcaaatccaaaagttaaatagcatgtatcttggctattgtcccaaaatcaaatgagctttaacccattttctaaat |
39318061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 32666804 - 32666845
Alignment:
| Q |
32 |
tccaagagccacccctaaaccattgatttcaccctaaatctt |
73 |
Q |
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|||||||||||||||||||| | |||||||| |||||||||| |
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| T |
32666804 |
tccaagagccacccctaaacaaatgatttcagcctaaatctt |
32666845 |
T |
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