View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17640_high_52 (Length: 226)
Name: NF17640_high_52
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_high_52 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 26 - 216
Target Start/End: Original strand, 35528550 - 35528739
Alignment:
| Q |
26 |
tctccgatcttttgattgagagagggacagctcatgtagtgagactccattagatgtatatatgtgctgataactgcaatacattaactcatttttaaac |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
35528550 |
tctccgatcttttgattgagagagggacagctcatgtagtgagactccgttagatgtatatatgtgctgataactgcaatacattaactcaatgttaaac |
35528649 |
T |
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| Q |
126 |
aaggaaatgaaggtgaattttacaaaccagcacatataaattcatgaaaaagaaaatcaacgagacctagcaaatgggaaatggaaagaga |
216 |
Q |
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| T |
35528650 |
aaggaaatgaaggtgaattttacaaaacagcacatataaattcatg-aaaagaaaatcaacgagacctagcaaatgggaaatggaaagaga |
35528739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 26 - 203
Target Start/End: Original strand, 35576171 - 35576348
Alignment:
| Q |
26 |
tctccgatcttttgattgagagagggacagctcatgtagtgagactccattagatgtatatatgtgctgataactgcaatacattaactcatttttaaac |
125 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| | |||||| |
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| T |
35576171 |
tctccgatcttttgatagagagagggacagctcatgtagtgagactccattagatgtatatatatgcaggtaactgcaatacattaactcaatgttaaac |
35576270 |
T |
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| Q |
126 |
aaggaaatgaaggtgaattttacaaaccagcacatataaattcatgaaaaagaaaatcaacgagacctagcaaatggg |
203 |
Q |
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| T |
35576271 |
aaggaaatgaaggctaattttacaaaacagcacatatcaattcacgaaaaagaaaatcaacaagaactagaaaatggg |
35576348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 92 - 212
Target Start/End: Original strand, 35536525 - 35536645
Alignment:
| Q |
92 |
ctgataactgcaatacattaactcatttttaaacaaggaaatgaaggtgaattttacaaaccagcacatataaattcatgaaaaagaaaatcaacgagac |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
35536525 |
ctgataactgcaatacattaactcatttttaaacaaggaaatgaaggtgaattttacaaaacagcgcatataaattcatgaaaaagaaaatcaacgagac |
35536624 |
T |
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| Q |
192 |
ctagcaaatgggaaatggaaa |
212 |
Q |
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| T |
35536625 |
ctagcaaatgggaaatggaaa |
35536645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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