View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17640_high_54 (Length: 220)
Name: NF17640_high_54
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_high_54 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 35366660 - 35366441
Alignment:
| Q |
1 |
cgtgttactaggtatttgcctgttggttttcgcagggaattgtctaggcaaaaactgcagcaatatgcagatacgagttttgatgatgttgaatttgaat |
100 |
Q |
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| T |
35366660 |
cgtgttactaggtatttgcctgttggttttcgtagggaattgtctaggcaaaaactgcagcaatatgcagatacgagttttgatgatgttgaatttgaat |
35366561 |
T |
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| Q |
101 |
ttcttgatgattgtgatatgggtttaggtaatggtaatagttcaagtagtgatgagtttcatcatgataatcatatggagttggatgttgaagaagatga |
200 |
Q |
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| T |
35366560 |
ttcttgatgattgtgatatgggtttaggtattggtaatagttcaagtagtgatgagtttcatcatgataatcatatggagttggatgttgaagaagatga |
35366461 |
T |
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| Q |
201 |
tgataaatgtgagaaggtta |
220 |
Q |
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| T |
35366460 |
tgataaatgtgagaaggtta |
35366441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 35374497 - 35374290
Alignment:
| Q |
1 |
cgtgttactaggtatttgcctgttggttttcgcagggaattgtctaggcaaaaactgcagcaatatgcagatacgagttttgatgatgttgaatttgaat |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| || | | ||| ||||||||||||||||| |
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| T |
35374497 |
cgtgttactaggtatttgcctgttggttttcgtagggaattgtctaggcaaaaactacagcaatatgcagacacaaatcttggtgatgttgaatttgaat |
35374398 |
T |
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| Q |
101 |
ttcttgatgattgtgatatgggtttaggtaatggtaatagttcaagtagtgatgagtttcatcatgataatcatatggagttggatgttgaagaagatga |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| || || |
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| T |
35374397 |
ttcttgatgattgtgatatgggtttaggtaatagtaatagttcaagtagtgatgagtttcatcatgataatcatatggagttagatattgaagatgagga |
35374298 |
T |
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| Q |
201 |
tgataaat |
208 |
Q |
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||||||| |
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| T |
35374297 |
ggataaat |
35374290 |
T |
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