View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17640_high_59 (Length: 203)
Name: NF17640_high_59
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_high_59 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 15262806 - 15262981
Alignment:
| Q |
12 |
gtgagaagaaaattggaaaaatggaaagtgagattagaaggattgagattgaagaagtggaaaatgctaagaaaaaatcaaatgcatttggagggattag |
111 |
Q |
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| T |
15262806 |
gtgagaagaaaattggaaaaatggaaagtgagattagaaggattgagattgaagaagtggaaaatgctaagaaaaaatcaaatgcatttggagggattag |
15262905 |
T |
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| Q |
112 |
atttgaggtattggatgcaactgaattggcattgttgagaccagatggtcatccaggtgcttacatgaatcctttt |
187 |
Q |
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| T |
15262906 |
atttgaggtattggatgtaactgaattggcattgttgagaccagatggtcatccaggtgcttacatgaatcctttt |
15262981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 15287618 - 15287445
Alignment:
| Q |
14 |
gagaagaaaattggaaaaatggaaagtgagattagaaggattgagattgaagaagtggaaaatgctaagaaaaaatcaaatgcatttggagggattagat |
113 |
Q |
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| T |
15287618 |
gagaagatagttggaggaatggatggtgagattagaaggattgagatagaagaagtggaaagtgccaagacaaaagctaataaatttgaaggtattagaa |
15287519 |
T |
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| Q |
114 |
ttgaggtattggatgcaactgaattggcattgttgagaccagatggtcatccaggtgcttacatgaatcctttt |
187 |
Q |
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| T |
15287518 |
ttgaggtgttggatgtaactaaattggcattattgagaccagatggtcatccaggtccttacatgaatcctttt |
15287445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 31 - 187
Target Start/End: Complemental strand, 15256930 - 15256774
Alignment:
| Q |
31 |
aatggaaagtgagattagaaggattgagattgaagaagtggaaaatgctaagaaaaaatcaaatgcatttggagggattagatttgaggtattggatgca |
130 |
Q |
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| T |
15256930 |
aatggatagtgagatgaggaaaattgaggttgaagaagttgaagatgctaaggtgaaaggtagtgaatttggaggggttaggtttgaggcacttgatgta |
15256831 |
T |
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| Q |
131 |
actgaattggcattgttgagaccagatggtcatccaggtgcttacatgaatcctttt |
187 |
Q |
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| T |
15256830 |
actaaattggcattgttgagaccagatggtcatccaggtccttatatgtaccctttt |
15256774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 92 - 187
Target Start/End: Complemental strand, 15265394 - 15265299
Alignment:
| Q |
92 |
aatgcatttggagggattagatttgaggtattggatgcaactgaattggcattgttgagaccagatggtcatccaggtgcttacatgaatcctttt |
187 |
Q |
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| T |
15265394 |
aatgaatttggaaggttaagatttgaagtattggatgtaacaaaattggctttgttaagaccagatggtcatccaggtccttatatgaatcctttt |
15265299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 15284418 - 15284470
Alignment:
| Q |
135 |
aattggcattgttgagaccagatggtcatccaggtgcttacatgaatcctttt |
187 |
Q |
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| T |
15284418 |
aattggcattgttgagaccagatggtcatgctggtgcttatatgaatcctttt |
15284470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 51383603 - 51383655
Alignment:
| Q |
135 |
aattggcattgttgagaccagatggtcatccaggtgcttacatgaatcctttt |
187 |
Q |
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| T |
51383603 |
aattggcattgttgagaccagatggtcatgcaggagcctacatgaatcctttt |
51383655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 44248140 - 44248090
Alignment:
| Q |
137 |
ttggcattgttgagaccagatggtcatccaggtgcttacatgaatcctttt |
187 |
Q |
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| T |
44248140 |
ttggcattattgagaccagatggtcatgcaggagcttatatgaatcctttt |
44248090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 11807060 - 11807008
Alignment:
| Q |
135 |
aattggcattgttgagaccagatggtcatccaggtgcttacatgaatcctttt |
187 |
Q |
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| T |
11807060 |
aattggcattgttgagaccagatggtcatgcaggagcttataggtatcctttt |
11807008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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