View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17640_high_8 (Length: 517)
Name: NF17640_high_8
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 16 - 507
Target Start/End: Original strand, 5654517 - 5655008
Alignment:
| Q |
16 |
ggaccaacaaagagaatgtttacatgaaccactttctgtgttttgaatattcattcatatatgggaatgaatgattcagtaatattagtcaataattcct |
115 |
Q |
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| T |
5654517 |
ggaccaacaaagaaaatgtttacatgaaccactttctgtgttttgaatattcattcatatatgggaatgaatgattcagtaatattagtcaataattcct |
5654616 |
T |
|
| Q |
116 |
ttaatttctgctgttagacaatttaatcaattggataaagatcagatgactcaaattgtaactcgacaaatccataacatcaaatattagccgttccaat |
215 |
Q |
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| T |
5654617 |
ttaatttctgctgttagacaatttaatcaattggataaagatcagatgactcaaattgtaactcgacaaatccataacatcaaatattcgccgttccaat |
5654716 |
T |
|
| Q |
216 |
cttcatcaacggtcgagatcattgacttcaatgataattgacaattgtgcagcaaagacatgctcattttttatcaagaagcnnnnnnntgagtgtatac |
315 |
Q |
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| T |
5654717 |
cttcatcaacggtcgagatcattgacttcaatgataattgatgattgtgcagcaaagacatgctcattttttatcaagcagcaaaaaaatgagtgtatac |
5654816 |
T |
|
| Q |
316 |
atgttttggtgtctagacataatttcaaatgcgaatgccagagcctatgaaatattgacacaaacacgaatactaggtaagacactgatacatacatttg |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5654817 |
atgttttggtgtctagacataatttcaaatgcgaatgccggagcctatgaaatattgacacaaacacgaatactaggtaagacactgatacatacatttg |
5654916 |
T |
|
| Q |
416 |
aaaaatgtatcagacgccaaaaggaacacacttaactgctaaaagaaacaacataattacatttgactatgcaacctttgctgtaacctatg |
507 |
Q |
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| T |
5654917 |
aaaaatgtatcagacgccaaaaggaacacacttaactgctaaaagaaacaacataattacatttgactatgcaacctttgctgtaacctatg |
5655008 |
T |
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