View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17640_low_10 (Length: 494)
Name: NF17640_low_10
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 14 - 451
Target Start/End: Complemental strand, 34136517 - 34136079
Alignment:
| Q |
14 |
agagtaatggtgaacaaggagaaagagaggttttctattccattcttcttcaatccaggacatgatgctgaaatcaagcctttggaggagcttacaaata |
113 |
Q |
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| T |
34136517 |
agagtaatggtgaacaaggagaaagagaggttttctattccattcttcttcaatccaggacatgatgctgaaatcaagcctttggaggagcttacaaata |
34136418 |
T |
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| Q |
114 |
agcaaaactctccaaaatataagccatataaatggggtaagttttttgtccacagattacacagtaatttcaagaaacaagatgaggagaatcttcaaat |
213 |
Q |
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| T |
34136417 |
agcaaaactctccaaaatataagccatataaatggggtaagttttttgtccacagattacacagtaatttcaagaaacaagatgaggagaatcttcaaat |
34136318 |
T |
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| Q |
214 |
ttatcattataagctacagtagagaaagatagtttaataaatgtatcacttagctca--tacacaaccaaagattgatcagtgtttctgaaatgagtgag |
311 |
Q |
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| T |
34136317 |
ttatcattataagctacagtagagaaagatagtttaataaatgtatcacttagctcatttacacaaccaaagattgatcagtgtttctgaaatgagtgag |
34136218 |
T |
|
| Q |
312 |
tggctgcaatcaaatttactagtattgaaattactagtgtgcattatgtaagaattttatctcggaataaaagaaaatttagttattaccgttcattatg |
411 |
Q |
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| T |
34136217 |
tggctgcaatcaaatttgctagtattgaaattactagtgtgcattatgtaagaattttatctcagaataaaagaaaatttagttattaccgttcattatg |
34136118 |
T |
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| Q |
412 |
tttgatcttcaaatattgaattgatataggctttcgaatt |
451 |
Q |
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| T |
34136117 |
tttgatc-tcaaatattgaattgatataggccttcaaatt |
34136079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 11 - 436
Target Start/End: Complemental strand, 34139472 - 34139049
Alignment:
| Q |
11 |
cacagagtaatggtgaacaaggagaaagagaggttttctattccattcttcttcaatccaggacatgatgctgaaatcaagcctttggaggagcttacaa |
110 |
Q |
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| T |
34139472 |
cacagagcattggtgaacaaggagaaagaaagattttctattccattctttttcaacccaggatatgatattgaaatcaagcctttggaggagcttatta |
34139373 |
T |
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| Q |
111 |
ataagcaaaactctccaaaatataagccatataaatggggtaagttttttgtccacagattacacagtaatttcaagaaacaagatgaggagaatcttca |
210 |
Q |
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| T |
34139372 |
acgagcaaaacccttcaaaatataagccttataaatggggtaaattttatgtccatagaacaaacagtaacttcaagaaacaagaagaggagaatcttca |
34139273 |
T |
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| Q |
211 |
aatttatcat--tataagctacagtagagaaagatagtttaataaatgtatcacttagctca--tacacaaccaaagattgatcagtgtttctgaaatga |
306 |
Q |
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| T |
34139272 |
aatttatcattatataagctaccttagagaaagatattttaataaatgtatgacttagctcatgtaaacaaccaaagattgatcggtgtttctaaaatga |
34139173 |
T |
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| Q |
307 |
gtgagtggctgcaatcaaatttactagtattgaaattactagtgtgcattatgtaagaattttatctcggaataaaagaaaatttagttattaccgttca |
406 |
Q |
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| T |
34139172 |
gcaactggctacaatcaaattt----gtattagaattact-gggtgcattatgtatgcaatttatctcataataaaagacaataaagttaataccgttca |
34139078 |
T |
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| Q |
407 |
ttatgtttgatcttcaaatattgaattgat |
436 |
Q |
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| T |
34139077 |
ttatgtttgatc-tcaaaaattgatttgat |
34139049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 32 - 230
Target Start/End: Complemental strand, 34142131 - 34141933
Alignment:
| Q |
32 |
gagaaagagaggttttctattccattcttcttcaatccaggacatgatgctgaaatcaagcctttggaggagcttacaaataagcaaaactctccaaaat |
131 |
Q |
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| T |
34142131 |
gagaaggaaaggttttctattcccttctttttattcccaggatatgacgctgaagtcaaaccttttgaagagcttataaatgagcaaaacccttcaaaat |
34142032 |
T |
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| Q |
132 |
ataagccatataaatggggtaagttttttgtccacagattacacagtaatttcaagaaacaagatgaggagaatcttcaaatttatcattataagctac |
230 |
Q |
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||| ||||||||||||||| |||||| |||| |||||| | |||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34142031 |
ataggccatataaatggggaaagtttcttgttcacagaaaagacagcaatatcaagaaacaagatgtggagaatcttcaaatttatcattataagctac |
34141933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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