View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17640_low_13 (Length: 472)
Name: NF17640_low_13
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 6e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 315 - 461
Target Start/End: Original strand, 26879305 - 26879451
Alignment:
| Q |
315 |
gccatgcatgtgggatcccttggatattctaaataggagtctatattatgtagttattataccctgcctcattcacttgcaaattatcttttttcatctc |
414 |
Q |
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| T |
26879305 |
gccatgcatgtgggatcccttggatattctaaataggagtctatattatgtagttattataccctgcctcattcacttgcaaattatcttttttcttctc |
26879404 |
T |
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| Q |
415 |
tataccttgatatggatcaaaacgatctacaacctctacctttgcta |
461 |
Q |
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| T |
26879405 |
tataccttgatatggatcaaaacgatctacaacctctacctttgcta |
26879451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 21 - 246
Target Start/End: Original strand, 26879004 - 26879233
Alignment:
| Q |
21 |
agactttagtcatatttaccttnnnnnnntcatataaatatttattccnnnnnnnggtttaaaccctctgattctcagggaaaagactcttagtaattct |
120 |
Q |
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| T |
26879004 |
agactttagtcatatttaccttaaaaaaatcatataaatatttattcctttttttggtttaaaccctctgattctcaggaaaaaggcccttagtaattct |
26879103 |
T |
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| Q |
121 |
aaagtttaatcgggaggtagctaaaacctgaccaaatatttt----gtcaagattcgaaatagaattcttttgaatagttcatccttaattaaaacatat |
216 |
Q |
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| T |
26879104 |
aaagtttaatcgagaggtagctaaaacctgaccaaatattatttctgtcaagattcgaaataggattctttcgaataattcatccttaattaaaacatat |
26879203 |
T |
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| Q |
217 |
taacaacttaaactcatccacttgacagcg |
246 |
Q |
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| T |
26879204 |
taacaacttaaactcatccacttgacagcg |
26879233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 385 - 458
Target Start/End: Original strand, 39299415 - 39299488
Alignment:
| Q |
385 |
attcacttgcaaattatcttttttcatctctataccttgatatggatcaaaacgatctacaacctctacctttg |
458 |
Q |
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| T |
39299415 |
attcacttgcaaagtaactttattcttctcaatacattgatatgaatcaaaacgatcttcagcctctacctttg |
39299488 |
T |
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