View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17640_low_14 (Length: 470)
Name: NF17640_low_14
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 96 - 384
Target Start/End: Original strand, 4871192 - 4871480
Alignment:
| Q |
96 |
ccttaatacaatagaatcacagcagaaaaaccttaaccaaatcaagaaaaaacacccagactttcccctaacacaaaatcaaaccagttgccatcaacac |
195 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
4871192 |
ccttaatacaatataatcacagcagaaaaaccttaaccaaatcaagcaaacacacccagaccttcccctaacacaaaatcaaaccagtttccatcaacac |
4871291 |
T |
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| Q |
196 |
cacatcaatagaccccctaaataattgaaccaaaaccagccacctaaacttcctggtacaagtaaattacaattacttagtagatattgatatgtcttgt |
295 |
Q |
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|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4871292 |
cacatcaatagaccccttaaataattgaacaaaaaccagccacctaaacttcctggtaccagtaaattacaattacttagtagatattgatatgtcttgt |
4871391 |
T |
|
| Q |
296 |
tgcattgatgtttcagaaatgtgtggctggagggcaatctttgggtcgtaacttccagaatatcttcgagcagcgattgattttgggag |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4871392 |
tgcattgatgtttcagaaatgtgtggctggagggcaatctttgggtcgtaacttccacaatatcttcgagcagcgattgattttgggag |
4871480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 177 - 388
Target Start/End: Original strand, 4845515 - 4845725
Alignment:
| Q |
177 |
aaccagttgccatcaacaccacatcaatagaccccctaaataattgaaccaaaaccagccacctaaacttcctggtacaagtaaattacaattacttagt |
276 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4845515 |
aaccagtttccatcaacaccacatcaatagacccc-taaataattgaacaaaaaccagccacctaaacttcctggtaccagtaaattacaattacttagt |
4845613 |
T |
|
| Q |
277 |
agatattgatatgtcttgttgcattgatgtttcagaaatgtgtggctggagggcaatctttgggtcgtaacttccagaatatcttcgagcagcgattgat |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4845614 |
agatattgatatgtcttgttgcattgatgtttcagaaatgtgtggctggagggtaatctttgggtcgtaacttccacaatatcttcgagcagcgattgat |
4845713 |
T |
|
| Q |
377 |
tttgggaggttt |
388 |
Q |
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|||||||||||| |
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| T |
4845714 |
tttgggaggttt |
4845725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 264 - 338
Target Start/End: Original strand, 4826196 - 4826270
Alignment:
| Q |
264 |
acaattacttagtagatattgatatgtcttgttgcattgatgtttcagaaatgtgtggctggagggcaatctttg |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
4826196 |
acaattacttagtagatattgatatgtcttgttgcattgatgtttcagaaatgtgtgggtggagggcaatttttg |
4826270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 4841583 - 4841636
Alignment:
| Q |
96 |
ccttaatacaatagaatcacagcagaaaaaccttaaccaaatcaagaaaaaaca |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4841583 |
ccttaatacaatagaatcacagcagaaaaaccttaaccaaatcaagcaaaaaca |
4841636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 4834866 - 4834911
Alignment:
| Q |
96 |
ccttaatacaatagaatcacagcagaaaaaccttaaccaaatcaag |
141 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4834866 |
ccttaatacaatagaatcacagcagaaaaaccttaaccaaatcaag |
4834911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 413 - 454
Target Start/End: Original strand, 4835111 - 4835152
Alignment:
| Q |
413 |
aaaggcagcatcagaaaaatgttgaggaacaaacataagagc |
454 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
4835111 |
aaaggcagcatcagcaaaatgttgaggaccaaacataagagc |
4835152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 264 - 317
Target Start/End: Original strand, 4841634 - 4841687
Alignment:
| Q |
264 |
acaattacttagtagatattgatatgtcttgttgcattgatgtttcagaaatgt |
317 |
Q |
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|||||| |||||| ||||||| |||| ||||| ||||||||||||||||||||| |
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| T |
4841634 |
acaattgcttagttgatattggtatgccttgtcgcattgatgtttcagaaatgt |
4841687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 333
Target Start/End: Original strand, 4860515 - 4860577
Alignment:
| Q |
271 |
cttagtagatattgatatgtcttgttgcattgatgtttcagaaatgtgtggctggagggcaat |
333 |
Q |
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||||||||||||||||||| |||| || ||||||||| ||||||||| | ||||||||||| |
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| T |
4860515 |
cttagtagatattgatatgccttgccgcgttgatgttttagaaatgtgcaggtggagggcaat |
4860577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 317
Target Start/End: Original strand, 4834922 - 4834975
Alignment:
| Q |
264 |
acaattacttagtagatattgatatgtcttgttgcattgatgtttcagaaatgt |
317 |
Q |
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|
||||||||||||| |||||| |||| ||||| || |||||||||||||||||| |
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| T |
4834922 |
acaattacttagttgatatttgtatgccttgtcgcgttgatgtttcagaaatgt |
4834975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 124
Target Start/End: Original strand, 4860482 - 4860510
Alignment:
| Q |
96 |
ccttaatacaatagaatcacagcagaaaa |
124 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
4860482 |
ccttaatacaatagaatcacagcagaaaa |
4860510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 124
Target Start/End: Original strand, 4880489 - 4880517
Alignment:
| Q |
96 |
ccttaatacaatagaatcacagcagaaaa |
124 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
4880489 |
ccttaatacaatagaatcacagcagaaaa |
4880517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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