View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17640_low_15 (Length: 467)
Name: NF17640_low_15
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_low_15 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 432; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 12 - 467
Target Start/End: Complemental strand, 35367101 - 35366646
Alignment:
| Q |
12 |
atgaacgggataagactaaaagaaggttgcaacgttggttctgcaaatatccaagtggattagcatggttttggttggaaaaaataatagcccaccaaat |
111 |
Q |
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| T |
35367101 |
atgaacgggataagactaaaagaaggttgcaacgttggttctgcaaatatccaagtggattagcatggttttggttggaaaaaataatagcacaccaaat |
35367002 |
T |
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| Q |
112 |
gacgtggatccatgctgtaacattatattaccataataatattagctttctctctaatctatatcaatcatttgaatatgctgattatgttctcatctta |
211 |
Q |
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| T |
35367001 |
gacgtggatccatgctgtaacattatattaccataataatattagctttctctctaatctatatcaatcatttgaatatgctgattatgttctcatctta |
35366902 |
T |
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| Q |
212 |
aaatctcaaaacctcaattaacaatcttaatctataaccaattgggccctatcaacacatgttgtgtcaaaatcactcttacatgttcgcggcgattaga |
311 |
Q |
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| T |
35366901 |
aaatctcaaaacctcaattaacaatcttaatctataaccaattgggccctatcaacacatgttgtgccaaaatcactcttacatgttcgtggcgattaga |
35366802 |
T |
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| Q |
312 |
gagatattgtcacaccctttgatgatttttctaatcttgtataaaaagacattcattgttcattctattttccacacacaacatctgagtcaaacattag |
411 |
Q |
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| T |
35366801 |
gagatattgtcacaccctttgatgatttttctaatcttgtataaaaagacattcattgttcattctattttccacacacaacatttgagtcaaacattag |
35366702 |
T |
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| Q |
412 |
ggaccacgttaatattcctcatgggtgcaacatctatgtcccgtgttactaggtat |
467 |
Q |
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| T |
35366701 |
agaccacgttaatattcatcatgggtgcaacatctatgtcccgtgttactaggtat |
35366646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 346 - 405
Target Start/End: Complemental strand, 35374586 - 35374527
Alignment:
| Q |
346 |
tcttgtataaaaagacattcattgttcattctattttccacacacaacatctgagtcaaa |
405 |
Q |
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| T |
35374586 |
tcttgtataaaaagagatccattgttcattctattttccacacacaacatttgagtcaaa |
35374527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 467
Target Start/End: Complemental strand, 35374520 - 35374483
Alignment:
| Q |
430 |
tcatgggtgcaacatctatgtcccgtgttactaggtat |
467 |
Q |
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| T |
35374520 |
tcatgggtgcaacctctttgtcccgtgttactaggtat |
35374483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 211
Target Start/End: Complemental strand, 35374745 - 35374717
Alignment:
| Q |
183 |
ttgaatatgctgattatgttctcatctta |
211 |
Q |
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| T |
35374745 |
ttgaatatgctgattatgttctcatctta |
35374717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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