View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17640_low_17 (Length: 454)

Name: NF17640_low_17
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17640_low_17
NF17640_low_17
[»] chr7 (5 HSPs)
chr7 (13-438)||(32530696-32531121)
chr7 (189-336)||(5284419-5284566)
chr7 (189-336)||(5302607-5302754)
chr7 (139-389)||(46706802-46707052)
chr7 (136-336)||(5289508-5289708)
[»] chr5 (6 HSPs)
chr5 (150-336)||(1499351-1499537)
chr5 (133-335)||(1492280-1492482)
chr5 (289-336)||(1482304-1482351)
chr5 (289-336)||(1478110-1478157)
chr5 (289-336)||(1505088-1505135)
chr5 (289-336)||(1486781-1486828)
[»] chr2 (1 HSPs)
chr2 (289-336)||(24163754-24163801)
[»] chr1 (3 HSPs)
chr1 (148-336)||(44128685-44128873)
chr1 (148-336)||(44132890-44133078)
chr1 (148-336)||(44141312-44141500)
[»] chr3 (1 HSPs)
chr3 (292-343)||(40421885-40421936)


Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 13 - 438
Target Start/End: Original strand, 32530696 - 32531121
Alignment:
Q  13 gagacaatctcaaaaatcggacgctccacggttaaatctggatccgcaccaataatcattgctgcggctccatcaccgaagagcgcctgtcctacaagtg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32530696 gagacaatctcaaaaatcggacgctccacggttaaatctggatccgcaccaataatcattgctgcggctccatcaccgaagagcgcctgtcctacaagtg 32530795  T
Q  113 aatctaaatgagtatctgatggaccacggaaagtaactgcagtgatttcagaacaaacaacaagaactcttgcatttttgttattctcagcaagatcttt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32530796 aatctaaatgagtatctgatggaccacggaaagtaactgcagtgatttcagaacaaacaacaagaactcttgcatttttgttattctcagcaagatcttt 32530895  T
Q  213 cgctaagcggagaactgtgccgcctgcaaaacaaccttgttgatacatcatgagacgtttgacagatggttttaggcctaagagtttggtgagttggtaa 312  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32530896 cgctaagcggagaactgtgccgcctgcgaaacaaccttgttgatacatcatgagacgtttgacagatggttttaggcctaagagtttagtgagttggtaa 32530995  T
Q  313 tcggcacccggcatgtctacaccagaagttgtgcagaaaactacgtgggtgattttggattttggttgaccccattcagctatggcnnnnnnngcagcat 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  32530996 tcggcacccggcatgtctacaccagaagttgtgcagaaaactacgtgggtgattttggattttggttgaccccattcagctatggctttttttgcagcat 32531095  T
Q  413 ctttacctagctttggtacttccact 438  Q
    ||||||||||||||||||||||||||    
T  32531096 ctttacctagctttggtacttccact 32531121  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 336
Target Start/End: Complemental strand, 5284566 - 5284419
Alignment:
Q  189 tttgttattctcagcaagatctttcgctaagcggagaactgtgccgcctgcaaaacaaccttgttgatacatcatgagacgtttgacagatggttttagg 288  Q
    |||||| |||||||| | |||||| || || || || || || || ||||||||||| |||||||| |||||||||   | ||| ||| ||||    ||     
T  5284566 tttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgttggtacatcatgtaccttttcacatatgggcgaaga 5284467  T
Q  289 cctaagagtttggtgagttggtaatcggcacccggcatgtctacacca 336  Q
    || ||||||||||||||||| |||||||| || |||||||||||||||    
T  5284466 cccaagagtttggtgagttgataatcggctccaggcatgtctacacca 5284419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 336
Target Start/End: Complemental strand, 5302754 - 5302607
Alignment:
Q  189 tttgttattctcagcaagatctttcgctaagcggagaactgtgccgcctgcaaaacaaccttgttgatacatcatgagacgtttgacagatggttttagg 288  Q
    |||||| |||||||| |||||||| || || || || || ||||| ||||||||||| |||||||| |||||||||   | ||| ||| ||||    ||     
T  5302754 tttgttgttctcagctagatctttggccaaacgaagcaccgtgccacctgcaaaacacccttgttggtacatcatgtaccttttcacatatgggcgaaga 5302655  T
Q  289 cctaagagtttggtgagttggtaatcggcacccggcatgtctacacca 336  Q
    || ||||||||||||||||| ||||| ||  | |||||||||||||||    
T  5302654 cccaagagtttggtgagttgataatcagcttcgggcatgtctacacca 5302607  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 389
Target Start/End: Original strand, 46706802 - 46707052
Alignment:
Q  139 cggaaagtaactgcagtgatttcagaacaaacaacaagaactcttgcatttttgttattctcagcaagatctttcgctaagcggagaactgtgccgcctg 238  Q
    ||||| || |||||||||| ||||||||||||||| |  || |  |||  |||||| |||||||| | ||| || || || || ||  | ||||| ||||    
T  46706802 cggaatgtgactgcagtgacttcagaacaaacaaccaatacacgggcacctttgttgttctcagccaaatcgttagccaaacgaagccccgtgcctcctg 46706901  T
Q  239 caaaacaaccttgttgatacatcatgagacgtttgacagatggttttaggcctaagagtttggtgagttggtaatcggcacccggcatgtctacaccaga 338  Q
    |||| ||||||||||| ||||||||    | ||| ||| ||||    || || |||||||| |||||||||||||| || || |||||||||||||||      
T  46706902 caaagcaaccttgttggtacatcatataccttttcacatatgggcgaagaccgaagagttttgtgagttggtaatcagctccaggcatgtctacaccact 46707001  T
Q  339 agttgtgcagaaaactacgtgggtgattttggattttggttgaccccattc 389  Q
    ||| ||||| |  | || |||||| || || || |||||||||||||||||    
T  46707002 agtagtgcaaacgattaagtgggtaatctttgactttggttgaccccattc 46707052  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 336
Target Start/End: Original strand, 5289508 - 5289708
Alignment:
Q  136 ccacggaaagtaactgcagtgatttcagaacaaacaacaagaactcttgcatttttgttattctcagcaagatctttcgctaagcggagaactgtgccgc 235  Q
    |||||||| || || || |||| ||||||||||||||| |  || |  |||  |||||| |||||||| | |||||| || || || || || ||||| |    
T  5289508 ccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccac 5289607  T
Q  236 ctgcaaaacaaccttgttgatacatcatgagacgtttgacagatggttttaggcctaagagtttggtgagttggtaatcggcacccggcatgtctacacc 335  Q
    |||||||||| |||||||| ||||||||    | ||| ||| ||||    || || |||||||| |||||||| |||||||| || ||||||||||||||    
T  5289608 ctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataatcggctccaggcatgtctacacc 5289707  T
Q  336 a 336  Q
    |    
T  5289708 a 5289708  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 150 - 336
Target Start/End: Complemental strand, 1499537 - 1499351
Alignment:
Q  150 tgcagtgatttcagaacaaacaacaagaactcttgcatttttgttattctcagcaagatctttcgctaagcggagaactgtgccgcctgcaaaacaacct 249  Q
    |||||||||||||||||||||||| |  || |  |||  ||||||||||||||| |  || ||||| || || || ||||| || |||||| |||| |||    
T  1499537 tgcagtgatttcagaacaaacaaccaacacacgagcacctttgttattctcagctaagtccttcgccaaacgaagtactgttccacctgcataacaccct 1499438  T
Q  250 tgttgatacatcatgagacgtttgacagatggttttaggcctaagagtttggtgagttggtaatcggcacccggcatgtctacacca 336  Q
     |||| |||||||||   | ||| ||| |||| || || ||||||||||| || ||||||||||| ||||| |||||||||||||||    
T  1499437 agttggtacatcatgtaccttttcacatatgggttaagacctaagagttttgttagttggtaatccgcaccaggcatgtctacacca 1499351  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 133 - 335
Target Start/End: Complemental strand, 1492482 - 1492280
Alignment:
Q  133 ggaccacggaaagtaactgcagtgatttcagaacaaacaacaagaactcttgcatttttgttattctcagcaagatctttcgctaagcggagaactgtgc 232  Q
    |||||||| || || |||||||||| ||||||||||||||| |  || |  |||  |||||| |||||||| | ||| || || || || || || ||||    
T  1492482 ggaccacgaaatgtgactgcagtgacttcagaacaaacaactaacacacgagcacctttgttgttctcagccaaatccttagccaaacgaagtaccgtgc 1492383  T
Q  233 cgcctgcaaaacaaccttgttgatacatcatgagacgtttgacagatggttttaggcctaagagtttggtgagttggtaatcggcacccggcatgtctac 332  Q
    | ||||||||||||||||| || |||||||||   | ||| ||| ||||    || ||||||||||| |||||||| |||||||| || |||||||||||    
T  1492382 cacctgcaaaacaaccttgctggtacatcatgtatctttttacatatggacgaagacctaagagtttagtgagttgataatcggccccaggcatgtctac 1492283  T
Q  333 acc 335  Q
    |||    
T  1492282 acc 1492280  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 336
Target Start/End: Complemental strand, 1482351 - 1482304
Alignment:
Q  289 cctaagagtttggtgagttggtaatcggcacccggcatgtctacacca 336  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||    
T  1482351 cctaagagttttgtgagttggtaatcggcaccaggcatgtctacacca 1482304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 336
Target Start/End: Complemental strand, 1478157 - 1478110
Alignment:
Q  289 cctaagagtttggtgagttggtaatcggcacccggcatgtctacacca 336  Q
    |||||||||||||||||||||||||| || || |||||||||||||||    
T  1478157 cctaagagtttggtgagttggtaatcagcgccaggcatgtctacacca 1478110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 336
Target Start/End: Complemental strand, 1505135 - 1505088
Alignment:
Q  289 cctaagagtttggtgagttggtaatcggcacccggcatgtctacacca 336  Q
    |||||||||||||||||||||||||| || || |||||||||||||||    
T  1505135 cctaagagtttggtgagttggtaatcagctccaggcatgtctacacca 1505088  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 336
Target Start/End: Complemental strand, 1486828 - 1486781
Alignment:
Q  289 cctaagagtttggtgagttggtaatcggcacccggcatgtctacacca 336  Q
    ||||||||||| |||||||||||||||||||| |||||| ||| ||||    
T  1486828 cctaagagttttgtgagttggtaatcggcaccaggcatgcctatacca 1486781  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 336
Target Start/End: Original strand, 24163754 - 24163801
Alignment:
Q  289 cctaagagtttggtgagttggtaatcggcacccggcatgtctacacca 336  Q
    ||||||||||| |||||||||||||||||||| ||||| |||||||||    
T  24163754 cctaagagttttgtgagttggtaatcggcaccaggcatatctacacca 24163801  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 336
Target Start/End: Complemental strand, 44128873 - 44128685
Alignment:
Q  148 actgcagtgatttcagaacaaacaacaagaactcttgcatttttgttattctcagcaagatctttcgctaagcggagaactgtgccgcctgcaaaacaac 247  Q
    |||||||||| ||||||||| ||||| |  || |  |||  |||||| || ||||| | |||||| || || || || || ||||| |||||||| ||||    
T  44128873 actgcagtgacttcagaacagacaaccaacacacgagcacctttgttgttttcagctaaatctttagccaaacgaaggaccgtgcctcctgcaaagcaac 44128774  T
Q  248 cttgttgatacatcatgagacgtttgacagatggttttaggcctaagagtttggtgagttggtaatcggcacccggcatgtctacacca 336  Q
    ||||||| ||||||||    | ||| ||| ||||    || ||||||||||| |||||||||||||| || || |||||||||||||||    
T  44128773 cttgttggtacatcatataccttttcacatatgggcgaagacctaagagttttgtgagttggtaatcagctccaggcatgtctacacca 44128685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 336
Target Start/End: Complemental strand, 44133078 - 44132890
Alignment:
Q  148 actgcagtgatttcagaacaaacaacaagaactcttgcatttttgttattctcagcaagatctttcgctaagcggagaactgtgccgcctgcaaaacaac 247  Q
    |||||||||| ||||||||| ||||| |  || |  |||  |||||| || ||||| | |||||| || || || || || ||||| |||||||| ||||    
T  44133078 actgcagtgacttcagaacagacaaccaacacacgagcacctttgttgttttcagctaaatctttagccaaacgaaggaccgtgcctcctgcaaagcaac 44132979  T
Q  248 cttgttgatacatcatgagacgtttgacagatggttttaggcctaagagtttggtgagttggtaatcggcacccggcatgtctacacca 336  Q
    ||||||| ||||||||    | ||| ||| ||||    || ||||||||||| |||||||||||||| || || |||||||||||||||    
T  44132978 cttgttggtacatcatataccttttcacatatgggcgaagacctaagagttttgtgagttggtaatcagctccaggcatgtctacacca 44132890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 336
Target Start/End: Complemental strand, 44141500 - 44141312
Alignment:
Q  148 actgcagtgatttcagaacaaacaacaagaactcttgcatttttgttattctcagcaagatctttcgctaagcggagaactgtgccgcctgcaaaacaac 247  Q
    |||||||||| ||||||||| ||||| |  || |  |||  |||||| || ||||| | |||||| || || || || || ||||| |||||||| ||||    
T  44141500 actgcagtgacttcagaacagacaaccaacacacgagcacctttgttgttttcagctaaatctttagccaaacgaaggaccgtgcctcctgcaaagcaac 44141401  T
Q  248 cttgttgatacatcatgagacgtttgacagatggttttaggcctaagagtttggtgagttggtaatcggcacccggcatgtctacacca 336  Q
    ||||||| ||||||||    | ||| ||| ||||    || ||||||||||| |||||||||||||| || || |||||||||||||||    
T  44141400 cttgttggtacatcatataccttttcacatatgggcgaagacctaagagttttgtgagttggtaatcagctccaggcatgtctacacca 44141312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 343
Target Start/End: Original strand, 40421885 - 40421936
Alignment:
Q  292 aagagtttggtgagttggtaatcggcacccggcatgtctacaccagaagttg 343  Q
    ||||||||| ||||||| ||||| ||||| |||||||| |||||||||||||    
T  40421885 aagagtttgatgagttgataatcagcaccaggcatgtcaacaccagaagttg 40421936  T

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