View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17640_low_18 (Length: 447)

Name: NF17640_low_18
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17640_low_18
NF17640_low_18
[»] chr6 (5 HSPs)
chr6 (301-429)||(1953752-1953880)
chr6 (311-429)||(1939880-1939998)
chr6 (18-140)||(1954465-1954573)
chr6 (316-429)||(1924459-1924572)
chr6 (199-270)||(9852104-9852175)
[»] chr3 (4 HSPs)
chr3 (173-276)||(38511214-38511318)
chr3 (219-279)||(46835555-46835615)
chr3 (200-275)||(45640689-45640764)
chr3 (200-270)||(51646886-51646956)
[»] chr1 (2 HSPs)
chr1 (215-275)||(44621419-44621479)
chr1 (199-271)||(47932414-47932486)
[»] chr5 (1 HSPs)
chr5 (215-274)||(34509399-34509458)
[»] chr7 (2 HSPs)
chr7 (215-275)||(26000017-26000077)
chr7 (198-273)||(44111380-44111456)
[»] chr2 (2 HSPs)
chr2 (200-270)||(24538238-24538308)
chr2 (200-267)||(32277045-32277112)
[»] chr8 (1 HSPs)
chr8 (200-279)||(30850194-30850273)


Alignment Details
Target: chr6 (Bit Score: 121; Significance: 8e-62; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 301 - 429
Target Start/End: Complemental strand, 1953880 - 1953752
Alignment:
Q  301 tatggaaaatattcttaccaccaaggtgtacgaatgtttgcatgtccagtcttgatctcatagaaacccgttggaatttcctttgtcttcaagaacttga 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1953880 tatggaaaatattcttaccaccaaggtgtacgaatgtttgcatgtccagtcttgatctcataaaaacccgttggaatttcctttgtcttcaagaacttga 1953781  T
Q  401 atgattttagtggacattggtttgcaact 429  Q
    |||||||||||||||||||| ||||||||    
T  1953780 atgattttagtggacattggcttgcaact 1953752  T

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Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 311 - 429
Target Start/End: Complemental strand, 1939998 - 1939880
Alignment:
Q  311 attcttaccaccaaggtgtacgaatgtttgcatgtccagtcttgatctcatagaaacccgttggaatttcctttgtcttcaagaacttgaatgattttag 410  Q
    |||||||||||||||||||||| |||||||||||||| |||| || ||||||||| || ||||| |||||||||||||| ||||||||||| ||||| ||    
T  1939998 attcttaccaccaaggtgtacggatgtttgcatgtccggtctggacctcatagaagccagttgggatttcctttgtcttgaagaacttgaaagatttaag 1939899  T
Q  411 tggacattggtttgcaact 429  Q
    ||| ||||||||| |||||    
T  1939898 tgggcattggtttacaact 1939880  T

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Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 1954573 - 1954465
Alignment:
Q  18 catccctattatcatatatatagtttcatgcatctcatgtgtaagttcaattagaaggtcttaaattgagactatatatctaattaagtataattactag 117  Q
    ||||||||||||||    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||    
T  1954573 catccctattatca----tatagtttcatgcatgtcatgtgtaagttcaattagaaggtcttaaattgagacta----------taagtataattactag 1954488  T
Q  118 acaaaattagatagacctagata 140  Q
    |||||||||||||||||||||||    
T  1954487 acaaaattagatagacctagata 1954465  T

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Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 316 - 429
Target Start/End: Complemental strand, 1924572 - 1924459
Alignment:
Q  316 taccaccaaggtgtacgaatgtttgcatgtccagtcttgatctcatagaaacccgttggaatttcctttgtcttcaagaacttgaatgattttagtggac 415  Q
    |||||||||||||| || ||||||| ||||||||||||||| |||| ||| || || || ||||||||||||||||| |||||||| ||||||||||| |    
T  1924572 taccaccaaggtgtgcgtatgtttggatgtccagtcttgatatcatcgaacccagtgggcatttcctttgtcttcaaaaacttgaaagattttagtgggc 1924473  T
Q  416 attggtttgcaact 429  Q
    ||||  ||||||||    
T  1924472 attgacttgcaact 1924459  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 199 - 270
Target Start/End: Complemental strand, 9852175 - 9852104
Alignment:
Q  199 attggagccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataagta 270  Q
    ||||||||||||||||||||||||||||||| |||| ||| |||  |||||||||| ||||| |||||||||    
T  9852175 attggagccaaaaagattaggattagggttggcacaattttttagcagtgttattcatattagaaataagta 9852104  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 276
Target Start/End: Original strand, 38511214 - 38511318
Alignment:
Q  173 tagattgaaatcaaaggccaccatacattggagccaaaaag-attaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaa 271  Q
    |||||||||||||| |||||||| ||||||| ||| ||||  ||||||||||| |||  || ||||| ||||||||||||||| ||||| |||||||||     
T  38511214 tagattgaaatcaacggccaccaaacattggcgcccaaaatcattaggattagagtttgcaaattttgttaaaagtgttattcatattaaaaataagtat 38511313  T
Q  272 gatat 276  Q
    |||||    
T  38511314 gatat 38511318  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 279
Target Start/End: Original strand, 46835555 - 46835615
Alignment:
Q  219 gattagggttgacacattttcttaaaagtgttattcgtattataaataagtaagatatgat 279  Q
    |||||||||||||||| ||| |||| | |||||||| ||||| ||||||||| ||||||||    
T  46835555 gattagggttgacacaatttgttaatattgttattcatattagaaataagtatgatatgat 46835615  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 275
Target Start/End: Original strand, 45640689 - 45640764
Alignment:
Q  200 ttggagccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaagata 275  Q
    ||||||||||||  ||||||||||||||||||||| ||| |||| | |||||||  ||||| | |||| |||||||    
T  45640689 ttggagccaaaaccattaggattagggttgacacaatttgttaacattgttattgatattagagataaataagata 45640764  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 270
Target Start/End: Complemental strand, 51646956 - 51646886
Alignment:
Q  200 ttggagccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataagta 270  Q
    ||||||||||||| || | ||||||||||||||||  || |||| | |||||||| ||||| |||||||||    
T  51646956 ttggagccaaaaacatcaagattagggttgacacaaattgttaacaatgttattcatattagaaataagta 51646886  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 44621419 - 44621479
Alignment:
Q  215 ttaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaagata 275  Q
    ||||||||||||||||||||||||||||| | ||||||| |||||| ||||||||||||||    
T  44621419 ttaggattagggttgacacattttcttaacattgttattagtattagaaataagtaagata 44621479  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 199 - 271
Target Start/End: Complemental strand, 47932486 - 47932414
Alignment:
Q  199 attggagccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaa 271  Q
    |||||||||||||||||||||||||| ||||||||| |||||||| | ||||||| |||||| || |||||||    
T  47932486 attggagccaaaaagattaggattagagttgacacaatttcttaacattgttattagtattagaattaagtaa 47932414  T

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Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 215 - 274
Target Start/End: Original strand, 34509399 - 34509458
Alignment:
Q  215 ttaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaagat 274  Q
    ||||||||||||||||||||||||||||| | ||||||| |||||| |||||||||||||    
T  34509399 ttaggattagggttgacacattttcttaacattgttattagtattagaaataagtaagat 34509458  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 26000077 - 26000017
Alignment:
Q  215 ttaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaagata 275  Q
    ||||||||||||||| ||||||||||||| | ||||||| |||||| ||||||||||||||    
T  26000077 ttaggattagggttgtcacattttcttaacattgttattagtattagaaataagtaagata 26000017  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 273
Target Start/End: Complemental strand, 44111456 - 44111380
Alignment:
Q  198 cattggagccaaaaagat-taggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaaga 273  Q
    |||||| |||||| |||| ||| |||||||||||||  ||||||||| | ||||||| |||||  ||||||||||||    
T  44111456 cattggtgccaaagagatgtagaattagggttgacaatttttcttaacattgttattagtattggaaataagtaaga 44111380  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 200 - 270
Target Start/End: Complemental strand, 24538308 - 24538238
Alignment:
Q  200 ttggagccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataagta 270  Q
    ||||||||||||  ||||||||||||||||||||| ||| |||| | |||||||| ||||| |||||||||    
T  24538308 ttggagccaaaactattaggattagggttgacacaatttgttaacattgttattcatattagaaataagta 24538238  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 267
Target Start/End: Complemental strand, 32277112 - 32277045
Alignment:
Q  200 ttggagccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataa 267  Q
    |||| |||||||  ||||||||||||||||||||||||| |||| | ||||||| |||||| ||||||    
T  32277112 ttggcgccaaaataattaggattagggttgacacatttttttaacattgttattagtattagaaataa 32277045  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 279
Target Start/End: Original strand, 30850194 - 30850273
Alignment:
Q  200 ttggagccaaaaagattaggattagggttgacacattttcttaaaagtgttattcgtattataaataagtaagatatgat 279  Q
    ||||||||||||  |||| ||||||||||| |||| ||| |||  |||||||||| ||||| ||||||||| ||||||||    
T  30850194 ttggagccaaaatcattaagattagggttggcacaattttttagcagtgttattcatattagaaataagtatgatatgat 30850273  T

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