View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17640_low_19 (Length: 422)
Name: NF17640_low_19
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 39114663 - 39115074
Alignment:
| Q |
1 |
tatgaaatgagggatcacaatccctcaattttcttccaattattattgaaaactcctataaagagactccctccatttaagtttgggaaataattggtag |
100 |
Q |
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| T |
39114663 |
tatgaaatgagggatcacaatccctcaattttcttccaattattattgaaaactcctataaagagactccctccatttaagtttgggaaataattggtag |
39114762 |
T |
|
| Q |
101 |
acattaaaaattaattgacaatttgaaagagaaagaaacatataggatggtgtgataaatgtgatatatcagagatttaataagaaaagaaataaagata |
200 |
Q |
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| T |
39114763 |
acattaaaaattaattgacaatttgaaagagaaagaaacat-taagatggtgtgataaatgtgatatatcagagatttaataagaagagaaataaagata |
39114861 |
T |
|
| Q |
201 |
atatgacgtgttaaatgagtttatgagaattaagagagtctacatatcattgtactcttcaagtttagatgttttaatgtgtaaatgttaactcgtgctc |
300 |
Q |
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| T |
39114862 |
atgtgacgtgttaaatgagtttatgagaattaagagagtctacatatcattgtactcttcaagtttagatgttttaatgtgtaaatgttaactcgtgctc |
39114961 |
T |
|
| Q |
301 |
ttaaaccctaaataaatttaaaagataaagaggatacaaaatactggaagcacatgaataattaaaccacgtgtggtatacaacccaaacaggaataaaa |
400 |
Q |
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| T |
39114962 |
ttaaaccctaaataaatttaaaagataaagaggatacaaaataccggaagcacatgtataattaaaccacgtgtggtatacaacccaaacaggaat-aaa |
39115060 |
T |
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| Q |
401 |
acatattcttcgac |
414 |
Q |
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| T |
39115061 |
acatattattcgac |
39115074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 22865193 - 22865229
Alignment:
| Q |
203 |
atgacgtgttaaatgagtttatgagaattaagagagt |
239 |
Q |
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|||| ||||||||||||||||||||||| |||||||| |
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| T |
22865193 |
atgatgtgttaaatgagtttatgagaataaagagagt |
22865229 |
T |
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