View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17640_low_2 (Length: 734)
Name: NF17640_low_2
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 12 - 733
Target Start/End: Complemental strand, 6836533 - 6835826
Alignment:
| Q |
12 |
tatactcaaactaaaataattaaaggaacttaacatctacgatcattaaaaacattgctagaagaatccggcaaagaaaaaagagtacagagcaaacaaa |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6836533 |
tatactcaaactaaaataattaaaggaacttaacatctacc-tcattaaaaacattgctagaagaatccggcaaagaaaaaagagtacagagcaaacaaa |
6836435 |
T |
|
| Q |
112 |
aacataaacacgtttatattacatataaatgacaatcttccacacaaatacatgccaaatgaagtggttaatttgggctaaatatattctctgccgcaaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6836434 |
aacataaacacgtttatattacatataaatgacaatcttccacacaaatacatgccaaatgaagtggttaatttgggctaaatatattctctgccgcaaa |
6836335 |
T |
|
| Q |
212 |
tatttttccttcaccctagcaaacaaactataatcactaacatttgctagcttattaaaaaataaataccagtccttacaaggataacatttaaacatac |
311 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6836334 |
tatctttccttcaccctagcaaacaaactataatcactaacatttgctagcttattaaaaaataaataccagtccttacaaggataacatttaaacatac |
6836235 |
T |
|
| Q |
312 |
atatcttacatatattcaacacctaacacactaattatagtcgtaattaaagattgtacgatcaaatcttgcggttggaatcttcggtggaatggtttcc |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| || |||| || |||| ||||| || |
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|
| T |
6836234 |
atatcttacatatattcaacacctaacacactaattatagtcgtaattaaagattgtacaatcaaatcaagcgggtgcaatcatcattggagtggttgcc |
6836135 |
T |
|
| Q |
412 |
ttttgactgaccttcacctttattgagatagtaatcattaattttccaaataataatacgcactgtgtgtaacaaacctaagaagccaaagaatacaatc |
511 |
Q |
| |
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||| | || ||||||||| |||| | ||||| ||||| ||||||||||||||||| |||| |||| ||||| |||| ||| ||| ||||| |
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| T |
6836134 |
ttt----ttacattcaccttttttga---cgaaatcactaattccccaaataataatacgcagtgtgagtaagaaacccgagaaagaaaacaatccaatc |
6836042 |
T |
|
| Q |
512 |
caaatataaagcaacgttgaaagcaaatccatattaataccacccgtgacaggaactggggtaaccattaatattgcttttcggtaagtaacaagaagag |
611 |
Q |
| |
|
|||||| |||||| |||||||| ||| || | | || || || ||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
6836041 |
caaatacgaagcaatgttgaaagtaaaacc---tcattatcagcccagacaggatctggggtaaccattaatattgctattcggtaagtaacaagaagag |
6835945 |
T |
|
| Q |
612 |
atgcgagagtgaaacacatctccgtagataaaagccacataataaacctattactccaacgaataccactgatcataagcgagagtaaaacagttagcga |
711 |
Q |
| |
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||| ||||||||||||||| |||| |||||||||||| ||||||||| |||| |||||||||||| |||||||| ||||||||||| ||||||| |
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| T |
6835944 |
atgtgagagtgaaacacatgctaatagaaaaaagccacatagtaaacctatgactcaaacgaataccac---tcataagcaagagtaaaacacttagcga |
6835848 |
T |
|
| Q |
712 |
tgaaatgaaacatattgtgttc |
733 |
Q |
| |
|
|| ||||||||||||||||||| |
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|
| T |
6835847 |
tgcaatgaaacatattgtgttc |
6835826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 455 - 733
Target Start/End: Complemental strand, 6634150 - 6633872
Alignment:
| Q |
455 |
ttccaaataataatacgcactgtgtgtaacaaacctaagaagccaaagaatacaatccaaatataaagcaacgttgaaagcaaatccatattaataccac |
554 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6634150 |
ttccaaataataatacgcactgtgggtaacaaacctaagaagccaaagaatacaatccaaatataaagcaacgttgaaagcaaatccatattaataccac |
6634051 |
T |
|
| Q |
555 |
ccgtgacaggaactggggtaaccattaatattgcttttcggtaagtaacaagaagagatgcgagagtgaaacacatctccgtagataaaagccacataat |
654 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||| | |
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|
| T |
6634050 |
ccgtgacaggaactggggtaaccattaatattgctattcggtaagtaacaagaagagatgtgagagtgaaacacatgctaatagaaaaaagccacatagt |
6633951 |
T |
|
| Q |
655 |
aaacctattactccaacgaataccactgatcataagcgagagtaaaacagttagcgatgaaatgaaacatattgtgttc |
733 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
6633950 |
aaacctatgactccaacgaataccactgatcataagcaagagtaaaacacttagcgatgaaatgaaacatattgtgttc |
6633872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 327 - 733
Target Start/End: Complemental strand, 6808287 - 6807887
Alignment:
| Q |
327 |
tcaacacctaacacactaattatagtcgtaattaaagattgtacgatcaaatcttgcggttggaatcttcggtggaatggtttccttttgactgaccttc |
426 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||||||||||||||| | | |||||||||||||||| | |||||||||||| |||||||| |
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|
| T |
6808287 |
tcaacacctagcacactaattatagtcgtaattgaagattgtacgatcaaatcaagagagtggaatcttcggtggagttgtttccttttgattgaccttc |
6808188 |
T |
|
| Q |
427 |
acctttattgagatagtaatcattaattttccaaataataatacgcactgtgtgtaacaaacctaagaagccaaagaatacaatccaaatataaagcaac |
526 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||||| ||| |||||||||| ||| | ||| ||| |||||||||| | ||||| | |
|
|
| T |
6808187 |
acctttattgagatagtaatcattaattgtccaaataagaatacgcagagtgagtaacaaacccgagatggaaaacaatccaatccaaattttaagcacc |
6808088 |
T |
|
| Q |
527 |
gttgaaagcaaatccatattaataccacccgtgacaggaactggggtaaccattaatattgcttttcggtaagtaacaagaagagatgcgagagtgaaac |
626 |
Q |
| |
|
|||||||| || | | |||||||| | |||||| ||||||||||||||||||||||| ||| ||||||||||||||||| || ||||||||| |
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|
| T |
6808087 |
gttgaaagtaatttctcattaatacta---tatacaggatctggggtaaccattaatattgctattctgtaagtaacaagaagagttgttagagtgaaag |
6807991 |
T |
|
| Q |
627 |
acatctccgtagataaaagccacataataaacctattactccaacgaataccactgatcataagcgagagtaaaacagttagcgatgaaatgaaacatat |
726 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||| |||| |||||||||||| |||||||| ||||||||||| | ||||||| |||||||||| | |
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|
| T |
6807990 |
acatccccatagataaaagccacatagtaaacctatgactcaaacgaataccac---tcataagcaagagtaaaacactaagcgatgtaatgaaacatgt |
6807894 |
T |
|
| Q |
727 |
tgtgttc |
733 |
Q |
| |
|
||||||| |
|
|
| T |
6807893 |
tgtgttc |
6807887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 235 - 733
Target Start/End: Complemental strand, 6633158 - 6632665
Alignment:
| Q |
235 |
caaactataatcactaacatttgctagcttatt--aaaaaataaa-----taccagtccttacaaggataacatttaaacata--catatcttacatata |
325 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
6633158 |
caaactataatcactaacatttgct----tattgaaaaaaataaaaaatataccagtccttacaaggataaaatttaaacatatacatatcttacatata |
6633063 |
T |
|
| Q |
326 |
ttcaacacctaacacactaattatagtcgtaattaaagattgtacgatcaaatcttgcggttggaatcttcggtggaat--ggtttccttttgactgacc |
423 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||| ||||| | ||||||| |||| | |||| | |||| | ||| | ||| |
|
|
| T |
6633062 |
ctcaacatctaacacactaattatagtcgaaattaaagattgtacgattaaatcaaggggttggagtctttgttggagttctgtttgccttt---ttacc |
6632966 |
T |
|
| Q |
424 |
ttcacctttattgagatagtaatcattaattttccaaataataatacgcactgtgtgtaacaaacctaagaagccaaagaatacaatccaaatataaagc |
523 |
Q |
| |
|
||||| ||||||||| | ||||| ||||| ||||||||||||||||| |||| |||||||||| ||||| ||| ||| | ||||||||||||||| |
|
|
| T |
6632965 |
ttcacgtttattgag---gaaatcactaattccccaaataataatacgcagtgtgagtaacaaacccgagaaggaaaacaatcccatccaaatataaagc |
6632869 |
T |
|
| Q |
524 |
aacgttgaaagcaaatccatattaataccacccgtgacaggaactggggtaaccattaatattgcttttcggtaagtaacaagaagagatgcgagagtga |
623 |
Q |
| |
|
||||||||||| ||||||| || || || || | | ||||||||| |||| || |||| | |||||||||||||||||||| |||||||| |
|
|
| T |
6632868 |
aacgttgaaagaaaatcca---acgtatcatcccagagaatatctggggtaatcattcctactgctatgtcgtaagtaacaagaagagatgtgagagtga |
6632772 |
T |
|
| Q |
624 |
aacacatctccgtagataaaagccacataataaacctattactccaacgaataccactgatcataagcgagagtaaaacagttagcgatgaaatgaaaca |
723 |
Q |
| |
|
|||||||| | |||||| |||||||||| ||||||||| |||| |||||||||||||| ||||| ||||||||||| | || |||| ||||||||| |
|
|
| T |
6632771 |
aacacatccctatagatacaagccacatagtaaacctatgactcaaacgaataccactg---gtaagcaagagtaaaacactaagtgatgcaatgaaaca |
6632675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 6633392 - 6633223
Alignment:
| Q |
13 |
atactcaaactaaaataattaaaggaacttaacatctacgatcattaaaaacattgctagaagaatccggcaaagaaaaaagagtacagagcaaacaaaa |
112 |
Q |
| |
|
|||| ||||||||||||||||| | |||||||||||| | ||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
6633392 |
atacccaaactaaaataattaaggaaacttaacatctgcc-tcattaaaaaccttgctagaagaatccagcaaggaaaaaagagtacagagcaaacaaaa |
6633294 |
T |
|
| Q |
113 |
acataaacacgtttatattacatataaatgacaatcttccacacaaatacatgccaaatgaagtggttaatt |
184 |
Q |
| |
|
|||||||||| ||||||||||| | ||| ||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
6633293 |
acataaacacatttatattacacaaaaaatacaat-ttccacacaaatacatagcaaatgaagtggttaatt |
6633223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 287 - 437
Target Start/End: Complemental strand, 6636486 - 6636336
Alignment:
| Q |
287 |
ttacaaggataacatttaaacatacatatcttacatatattcaacacctaacacactaattatagtcgtaattaaagattgtacgatcaaatcttgcggt |
386 |
Q |
| |
|
|||||||||||| | ||||||||||| |||||||||||| |||| | || |||||||||||||||||||||||||||||| ||||||||||| | | |
|
|
| T |
6636486 |
ttacaaggataaaaattaaacatacaaatcttacatatactcaatgcatagcacactaattatagtcgtaattaaagattgcacgatcaaatcaagagtg |
6636387 |
T |
|
| Q |
387 |
tggaatcttcggtggaatggtttccttttgactgaccttcacctttattga |
437 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6636386 |
tggaatcttcggtggagtggtttccttttgactgaccttcacctttattga |
6636336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 91 - 181
Target Start/End: Complemental strand, 6808512 - 6808420
Alignment:
| Q |
91 |
aaagagtacagagcaaacaaaaacataaacacgtttatattacatataaat---gacaatcttccacacaaatacatgccaaatgaagtggtta |
181 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| |||||||||||||||||| ||||| ||| ||||||| |||||||||||||||||||||| |
|
|
| T |
6808512 |
aaagagtacagatcaaacaaaaacataaccacatttatattacatataaataaagacaa-cttacacacaagtacatgccaaatgaagtggtta |
6808420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 188
Target Start/End: Complemental strand, 6636663 - 6636597
Alignment:
| Q |
125 |
ttatattacatataaat----gacaatcttccacacaaatacatgccaaatgaagtggttaatttggg |
188 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6636663 |
ttatattacatataaataaaagacaa-cttccacacaaatacatgccaaatgaagtggttaacttggg |
6636597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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