View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17640_low_20 (Length: 415)

Name: NF17640_low_20
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17640_low_20
NF17640_low_20
[»] chr3 (13 HSPs)
chr3 (97-397)||(22939131-22939431)
chr3 (245-397)||(22913872-22914024)
chr3 (300-397)||(22934067-22934164)
chr3 (2-47)||(41747316-41747361)
chr3 (1-44)||(16876384-16876427)
chr3 (2-44)||(25924051-25924093)
chr3 (2-44)||(33887081-33887123)
chr3 (2-44)||(44512491-44512533)
chr3 (2-47)||(9559212-9559257)
chr3 (2-47)||(15096708-15096753)
chr3 (1-38)||(41747454-41747491)
chr3 (2-38)||(15096534-15096570)
chr3 (2-38)||(55090061-55090097)
[»] chr2 (9 HSPs)
chr2 (2-47)||(493737-493782)
chr2 (5-47)||(493961-494003)
chr2 (2-44)||(40385479-40385521)
chr2 (2-44)||(44612495-44612537)
chr2 (10-47)||(17920108-17920145)
chr2 (2-38)||(13691754-13691790)
chr2 (5-45)||(20298795-20298835)
chr2 (2-38)||(35635061-35635097)
chr2 (2-38)||(35635746-35635782)
[»] chr7 (7 HSPs)
chr7 (2-47)||(19336285-19336330)
chr7 (2-47)||(44412307-44412352)
chr7 (1-47)||(8603746-8603792)
chr7 (5-47)||(30335193-30335235)
chr7 (9-47)||(43746115-43746153)
chr7 (2-47)||(15108327-15108372)
chr7 (2-47)||(22335521-22335566)
[»] chr4 (5 HSPs)
chr4 (2-47)||(24670728-24670773)
chr4 (5-47)||(4928836-4928878)
chr4 (5-47)||(31110265-31110307)
chr4 (2-44)||(35370163-35370205)
chr4 (2-47)||(25244678-25244723)
[»] chr1 (2 HSPs)
chr1 (10-47)||(36454298-36454335)
chr1 (10-63)||(26486757-26486809)
[»] scaffold0148 (1 HSPs)
scaffold0148 (4-47)||(34984-35027)
[»] chr8 (4 HSPs)
chr8 (5-47)||(5160305-5160347)
chr8 (2-44)||(5160505-5160547)
chr8 (2-44)||(37611487-37611529)
chr8 (2-47)||(11105952-11105997)
[»] chr6 (3 HSPs)
chr6 (2-44)||(10366411-10366453)
chr6 (2-44)||(21604360-21604402)
chr6 (10-47)||(7017087-7017124)
[»] chr5 (3 HSPs)
chr5 (5-47)||(18811139-18811181)
chr5 (5-47)||(28277464-28277506)
chr5 (4-47)||(10331888-10331932)
[»] scaffold0009 (1 HSPs)
scaffold0009 (2-47)||(149996-150041)
[»] scaffold0511 (1 HSPs)
scaffold0511 (9-45)||(5237-5273)
[»] scaffold0430 (1 HSPs)
scaffold0430 (2-38)||(12494-12530)


Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 97 - 397
Target Start/End: Original strand, 22939131 - 22939431
Alignment:
Q  97 aaatccgaagaaccaaaacgatgctaaccacatctcctcaatttactaatatgatttaacaa-atgcttatataannnnnnnacaccgcaagatattaaa 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||       ||||||||||||||||||    
T  22939131 aaatccgaagaaccaaaacgatgctaaccacatctcctcaatttactaatatgatttaatttgatgcttatataaattttt-acaccgcaagatattaaa 22939229  T
Q  196 ctcttctatatattagagttacaaccagagattcatcacataaccatccaacatggatcttcaaatcatatacttcacgtccattttctctcttctcatg 295  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  22939230 ctcttctatatattagagttacaaacagagattcatcacaaaaccatccaacatggatcttcaaatcatatgcttcacgtccattttctcccttctcatg 22939329  T
Q  296 tttgtgtttatagcaaacaaaatactaaccaagaaatctgagtcatcagctcaaaatttgccaccaggtccattgaagttacctatcataggaaacatac 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22939330 tttgtgtttatagcaaacaaaatactaaccaagaaatctgagtcatcagctcaaaatttgccaccaggtccattgaagttacctatcataggaaacatac 22939429  T
Q  396 ac 397  Q
    ||    
T  22939430 ac 22939431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 245 - 397
Target Start/End: Original strand, 22913872 - 22914024
Alignment:
Q  245 aacatggatcttcaaatcatatacttcacgtccattttctctcttctcatgtttgtgtttatagcaaacaaaatactaaccaagaaatctgagtcatcag 344  Q
    ||||||||| |||||| | ||||||| || |||||||| || |||||| | || |||||||||| |||||||||| | |||||||||||  | ||||||     
T  22913872 aacatggatattcaaaccctatactttacatccattttttcccttctctttttcgtgtttatagtaaacaaaatagtgaccaagaaatccaactcatcaa 22913971  T
Q  345 ctcaaaatttgccaccaggtccattgaagttacctatcataggaaacatacac 397  Q
    ||| |||||| |||||||||||||||| ||||||||| |||||||||||||||    
T  22913972 ctccaaatttaccaccaggtccattgatgttacctattataggaaacatacac 22914024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 300 - 397
Target Start/End: Complemental strand, 22934164 - 22934067
Alignment:
Q  300 tgtttatagcaaacaaaatactaaccaagaaatctgagtcatcagctcaaaatttgccaccaggtccattgaagttacctatcataggaaacatacac 397  Q
    ||||||||| |||||||||| | |||||||||||  | |||||| ||| |||||| |||||||||||||||||||||||| | |||||||||||||||    
T  22934164 tgtttatagtaaacaaaatagtgaccaagaaatccaactcatcaactccaaatttaccaccaggtccattgaagttaccttttataggaaacatacac 22934067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 41747316 - 41747361
Alignment:
Q  2 tgctttacccccctttaatatatgtcattttttgtttcccccctgt 47  Q
    |||||||||||||| ||||||| |||||||||||||| ||||||||    
T  41747316 tgctttacccccctgtaatataggtcattttttgttttccccctgt 41747361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 16876427 - 16876384
Alignment:
Q  1 atgctttacccccctttaatatatgtcattttttgtttcccccc 44  Q
    ||||||||||||||| ||||||| |||||||||||||| |||||    
T  16876427 atgctttacccccctataatataggtcattttttgttttccccc 16876384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 25924051 - 25924093
Alignment:
Q  2 tgctttacccccctttaatatatgtcattttttgtttcccccc 44  Q
    |||||||||||||| ||||||| |||||||||||||| |||||    
T  25924051 tgctttacccccctgtaatataggtcattttttgttttccccc 25924093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 33887081 - 33887123
Alignment:
Q  2 tgctttacccccctttaatatatgtcattttttgtttcccccc 44  Q
    |||||||||||||| ||||||| |||||||||||||| |||||    
T  33887081 tgctttacccccctgtaatataggtcattttttgttttccccc 33887123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 44512533 - 44512491
Alignment:
Q  2 tgctttacccccctttaatatatgtcattttttgtttcccccc 44  Q
    |||||||||||||| ||||||| |||||||||||||| |||||    
T  44512533 tgctttacccccctgtaatataggtcattttttgttttccccc 44512491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 9559257 - 9559212
Alignment:
Q  2 tgctttacccccctttaatatatgtcattttttgtttcccccctgt 47  Q
    |||||||||||| | ||||||| |||||||||||||||||| ||||    
T  9559257 tgctttacccccttataatataggtcattttttgtttcccctctgt 9559212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 15096753 - 15096708
Alignment:
Q  2 tgctttacccccctttaatatatgtcattttttgtttcccccctgt 47  Q
    |||| ||||||||| ||||||| |||||||||||||| ||||||||    
T  15096753 tgctctacccccctgtaatataggtcattttttgttttccccctgt 15096708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 41747491 - 41747454
Alignment:
Q  1 atgctttacccccctttaatatatgtcattttttgttt 38  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  41747491 atgctttacccccctgtaatataggtcattttttgttt 41747454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 15096534 - 15096570
Alignment:
Q  2 tgctttacccccctttaatatatgtcattttttgttt 38  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  15096534 tgctttacccccctgtaatataggtcattttttgttt 15096570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 55090061 - 55090097
Alignment:
Q  2 tgctttacccccctttaatatatgtcattttttgttt 38  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  55090061 tgctttacccccctataatataggtcattttttgttt 55090097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 493737 - 493782
Alignment:
Q  2 tgctttacccccctttaatatatgtcattttttgtttcccccctgt 47  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||    
T  493737 tgctttacccccctgtaatataggtcattttttgtttcccccctgt 493782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 494003 - 493961
Alignment:
Q  5 tttacccccctttaatatatgtcattttttgtttcccccctgt 47  Q
    ||||||||||| ||||||| |||||||||||||| ||||||||    
T  494003 tttacccccctgtaatataggtcattttttgttttccccctgt 493961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 40385521 - 40385479
Alignment:
Q  2 tgctttacccccctttaatatatgtcattttttgtttcccccc 44  Q
    |||||||||||||| ||||||| |||||||||||||| |||||    
T  40385521 tgctttacccccctataatataggtcattttttgttttccccc 40385479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 44612537 - 44612495
Alignment:
Q  2 tgctttacccccctttaatatatgtcattttttgtttcccccc 44  Q
    |||||||||||||| ||||||| |||||||||||||| |||||    
T  44612537 tgctttacccccctgtaatataggtcattttttgttttccccc 44612495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 17920108 - 17920145
Alignment:
Q  10 ccccctttaatatatgtcattttttgtttcccccctgt 47  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  17920108 ccccctgtaatataggtcattttttgtttcccccctgt 17920145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 13691754 - 13691790
Alignment:
Q  2 tgctttacccccctttaatatatgtcattttttgttt 38  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  13691754 tgctttacccccctgtaatataggtcattttttgttt 13691790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 20298835 - 20298795
Alignment:
Q  5 tttacccccctttaatatatgtcattttttgtttcccccct 45  Q
    ||||||||||| ||||||| |||||||||||||| ||||||    
T  20298835 tttacccccctataatataggtcattttttgttttccccct 20298795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 35635061 - 35635097
Alignment:
Q  2 tgctttacccccctttaatatatgtcattttttgttt 38  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  35635061 tgctttacccccctgtaatataggtcattttttgttt 35635097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 35635746 - 35635782
Alignment:
Q  2 tgctttacccccctttaatatatgtcattttttgttt 38  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  35635746 tgctttacccccctgtaatataggtcattttttgttt 35635782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 19336330 - 19336285
Alignment:
Q  2 tgctttacccccctttaatatatgtcattttttgtttcccccctgt 47  Q
    |||||||||||||| ||||||| |||||||||||||| ||||||||    
T  19336330 tgctttacccccctgtaatataggtcattttttgttttccccctgt 19336285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 44412307 - 44412352
Alignment:
Q  2 tgctttacccccctttaatatatgtcattttttgtttcccccctgt 47  Q
    |||||||||||||| ||||||| ||||||||| |||||||||||||    
T  44412307 tgctttacccccctgtaatataggtcatttttggtttcccccctgt 44412352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 8603792 - 8603746
Alignment:
Q  1 atgctttacccccctttaatatatgtcattttttgtttcccccctgt 47  Q
    ||||||||||||||| ||||||| ||||||||||||||  |||||||    
T  8603792 atgctttacccccctgtaatataggtcattttttgtttttcccctgt 8603746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 30335193 - 30335235
Alignment:
Q  5 tttacccccctttaatatatgtcattttttgtttcccccctgt 47  Q
    ||||||||||| ||||||| |||||||||||||| ||||||||    
T  30335193 tttacccccctgtaatataggtcattttttgttttccccctgt 30335235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 43746153 - 43746115
Alignment:
Q  9 cccccctttaatatatgtcattttttgtttcccccctgt 47  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  43746153 cccccctgtaatatatgtcattttttgttttccccctgt 43746115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 15108372 - 15108327
Alignment:
Q  2 tgctttacccccctttaatatatgtcattttttgtttcccccctgt 47  Q
    |||||||||| ||| ||||||| |||||||||||||| ||||||||    
T  15108372 tgctttaccctcctgtaatataggtcattttttgttttccccctgt 15108327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 22335566 - 22335521
Alignment:
Q  2 tgctttacccccctttaatatatgtcattttttgtttcccccctgt 47  Q
    |||||||||||||| ||||||| ||||||||| |||| ||||||||    
T  22335566 tgctttacccccctgtaatataggtcatttttggttttccccctgt 22335521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 24670773 - 24670728
Alignment:
Q  2 tgctttacccccctttaatatatgtcattttttgtttcccccctgt 47  Q
    |||||||||||||| ||||||| |||||||||||||| ||||||||    
T  24670773 tgctttacccccctgtaatataggtcattttttgttttccccctgt 24670728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 4928836 - 4928878
Alignment:
Q  5 tttacccccctttaatatatgtcattttttgtttcccccctgt 47  Q
    ||||||||||| ||||||| |||||||||||||| ||||||||    
T  4928836 tttacccccctgtaatataggtcattttttgttttccccctgt 4928878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 31110265 - 31110307
Alignment:
Q  5 tttacccccctttaatatatgtcattttttgtttcccccctgt 47  Q
    ||||||||||| ||||||| |||||||||||||| ||||||||    
T  31110265 tttacccccctgtaatataggtcattttttgttttccccctgt 31110307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 35370163 - 35370205
Alignment:
Q  2 tgctttacccccctttaatatatgtcattttttgtttcccccc 44  Q
    |||||||||||||| ||||||| |||||||||||||| |||||    
T  35370163 tgctttacccccctataatataggtcattttttgttttccccc 35370205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 25244723 - 25244678
Alignment:
Q  2 tgctttacccccctttaatatatgtcattttttgtttcccccctgt 47  Q
    |||||||||| ||| ||||||||||||||||  |||||||||||||    
T  25244723 tgctttaccctcctgtaatatatgtcattttcggtttcccccctgt 25244678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 36454298 - 36454335
Alignment:
Q  10 ccccctttaatatatgtcattttttgtttcccccctgt 47  Q
    |||||||||||||||||||||||| |||||||||||||    
T  36454298 ccccctttaatatatgtcatttttcgtttcccccctgt 36454335  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 26486809 - 26486757
Alignment:
Q  10 ccccctttaatatatgtcattttttgtttcccccctgttaatataggtcatttt 63  Q
    |||||| ||||||| |||||||||| ||| |||||||| |||||||||||||||    
T  26486809 ccccctgtaatataggtcattttttattttccccctgt-aatataggtcatttt 26486757  T

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Target: scaffold0148 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 35027 - 34984
Alignment:
Q  4 ctttacccccctttaatatatgtcattttttgtttcccccctgt 47  Q
    |||||||||||| ||||||| |||||||||||||| ||||||||    
T  35027 ctttacccccctgtaatataggtcattttttgttttccccctgt 34984  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 5160305 - 5160347
Alignment:
Q  5 tttacccccctttaatatatgtcattttttgtttcccccctgt 47  Q
    ||||||||||| ||||||| ||||||||| |||||||||||||    
T  5160305 tttacccccctgtaatataggtcatttttggtttcccccctgt 5160347  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 5160547 - 5160505
Alignment:
Q  2 tgctttacccccctttaatatatgtcattttttgtttcccccc 44  Q
    |||||||||||||| ||||||| |||||||||||||| |||||    
T  5160547 tgctttacccccctgtaatataggtcattttttgttttccccc 5160505  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 37611529 - 37611487
Alignment:
Q  2 tgctttacccccctttaatatatgtcattttttgtttcccccc 44  Q
    |||||||||||||| ||||||| |||||||||||||| |||||    
T  37611529 tgctttacccccctgtaatataggtcattttttgttttccccc 37611487  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 11105997 - 11105952
Alignment:
Q  2 tgctttacccccctttaatatatgtcattttttgtttcccccctgt 47  Q
    |||||||||||||| ||||||| ||||||||||||||  |||||||    
T  11105997 tgctttacccccctgtaatataggtcattttttgtttttcccctgt 11105952  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 10366411 - 10366453
Alignment:
Q  2 tgctttacccccctttaatatatgtcattttttgtttcccccc 44  Q
    |||||||||||||| ||||||| |||||||||||||| |||||    
T  10366411 tgctttacccccctgtaatataggtcattttttgttttccccc 10366453  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 21604402 - 21604360
Alignment:
Q  2 tgctttacccccctttaatatatgtcattttttgtttcccccc 44  Q
    |||||||||||||| ||||||| |||||||||||||| |||||    
T  21604402 tgctttacccccctgtaatataggtcattttttgttttccccc 21604360  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 7017087 - 7017124
Alignment:
Q  10 ccccctttaatatatgtcattttttgtttcccccctgt 47  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  7017087 ccccctgtaatataggtcattttttgtttcccccctgt 7017124  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 18811139 - 18811181
Alignment:
Q  5 tttacccccctttaatatatgtcattttttgtttcccccctgt 47  Q
    ||||||||||| ||||||| |||||||||||||| ||||||||    
T  18811139 tttacccccctataatataggtcattttttgttttccccctgt 18811181  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 28277506 - 28277464
Alignment:
Q  5 tttacccccctttaatatatgtcattttttgtttcccccctgt 47  Q
    ||||||||||| ||||||| |||||||||||||| ||||||||    
T  28277506 tttacccccctgtaatataggtcattttttgttttccccctgt 28277464  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 10331932 - 10331888
Alignment:
Q  4 ctttacccccctttaatatatgtcattttttgtt-tcccccctgt 47  Q
    |||||||||||| ||||||| ||||||||||||| ||||||||||    
T  10331932 ctttacccccctgtaatataggtcattttttgttctcccccctgt 10331888  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 149996 - 150041
Alignment:
Q  2 tgctttacccccctttaatatatgtcattttttgtttcccccctgt 47  Q
    |||||||||||||| ||||||| ||||||||| |||| ||||||||    
T  149996 tgctttacccccctgtaatataggtcatttttggttttccccctgt 150041  T

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Target: scaffold0511 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 5237 - 5273
Alignment:
Q  9 cccccctttaatatatgtcattttttgtttcccccct 45  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  5237 cccccctgtaatatatgtcattttttgttttccccct 5273  T

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Target: scaffold0430 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0430
Description:

Target: scaffold0430; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 12494 - 12530
Alignment:
Q  2 tgctttacccccctttaatatatgtcattttttgttt 38  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  12494 tgctttacccccctgtaatataggtcattttttgttt 12530  T

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