View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17640_low_22 (Length: 379)

Name: NF17640_low_22
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17640_low_22
NF17640_low_22
[»] chr3 (9 HSPs)
chr3 (1-225)||(11614690-11614914)
chr3 (223-360)||(11614969-11615106)
chr3 (267-351)||(11606218-11606302)
chr3 (271-331)||(13752267-13752327)
chr3 (271-331)||(13765670-13765730)
chr3 (267-328)||(13738832-13738893)
chr3 (45-98)||(13738513-13738566)
chr3 (45-98)||(13751942-13751995)
chr3 (45-98)||(13765345-13765398)
[»] chr6 (2 HSPs)
chr6 (275-328)||(35079957-35080010)
chr6 (22-83)||(35080260-35080321)
[»] chr8 (4 HSPs)
chr8 (51-105)||(15607184-15607238)
chr8 (51-105)||(15626105-15626159)
chr8 (51-105)||(15638704-15638758)
chr8 (51-105)||(15649865-15649919)


Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 11614690 - 11614914
Alignment:
Q  1 attcacaaaaattcttggtgtcaacatttcattcaaaaataagatgcttgattaacatttactttttgatacactatacaccagttcagagtttcatctc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11614690 attcacaaaaattcttggtgtcaacatttcattcaaaaataagatgatagattaacatttactttttgatacactatacaccagttcagagtttcatctc 11614789  T
Q  101 tttcaagtcattagcttagcaatgtaaaaatcatacttctccaccggacaaaatatacggctaataacaataacaaaaatggatgtaccgaaaaaataga 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11614790 tttcaagtcattagcttagcagtgtaaaaatcatacttctccaccggacaaaatatacggctaataacaataacaaaaatggatgtaccgaaaaaataga 11614889  T
Q  201 agtgggaacgtgtaagggtgaaaaa 225  Q
    ||||| |||||||||||||||||||    
T  11614890 agtggaaacgtgtaagggtgaaaaa 11614914  T

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Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 223 - 360
Target Start/End: Original strand, 11614969 - 11615106
Alignment:
Q  223 aaatacattggtgcatcaaactaaaatcatataacgtgtaaggttgatttaattaaaattttatgtaccttgcttaggttcaacagatttagcatgagag 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11614969 aaatacattggtgcatcaaactaaaatcatataacgtgtaaggttgatttaattaaaattttatgtaccttgcttaggttcaacagatttagcatgagag 11615068  T
Q  323 cgcttcttcctcgtgtagttttcttgcaatgacgtagg 360  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  11615069 cgcttcttcctcatgtagttttcttgcaatggcgtagg 11615106  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 267 - 351
Target Start/End: Complemental strand, 11606302 - 11606218
Alignment:
Q  267 tgatttaattaaaattttatgtaccttgcttaggttcaacagatttagcatgagagcgcttcttcctcgtgtagttttcttgcaa 351  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||  |||||| ||||||||    
T  11606302 tgatttagttaaaaatttatgtaccttgcttaggttcaacagatttagcatgagaacgcttcttcttcacgtagttctcttgcaa 11606218  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 271 - 331
Target Start/End: Original strand, 13752267 - 13752327
Alignment:
Q  271 ttaattaaaattttatgtaccttgcttaggttcaacagatttagcatgagagcgcttcttc 331  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  13752267 ttaattaaaattttacgtaccttgattaggttcaacagatttagcatgagagcgcttcttc 13752327  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 271 - 331
Target Start/End: Original strand, 13765670 - 13765730
Alignment:
Q  271 ttaattaaaattttatgtaccttgcttaggttcaacagatttagcatgagagcgcttcttc 331  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  13765670 ttaattaaaattttacgtaccttggttaggttcaacagatttagcatgagagcgcttcttc 13765730  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 267 - 328
Target Start/End: Original strand, 13738832 - 13738893
Alignment:
Q  267 tgatttaattaaaattttatgtaccttgcttaggttcaacagatttagcatgagagcgcttc 328  Q
    ||||||| ||||||||  |||||||||||||| ||||||| |||||||||||||||||||||    
T  13738832 tgatttagttaaaattgaatgtaccttgcttatgttcaaccgatttagcatgagagcgcttc 13738893  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 13738513 - 13738566
Alignment:
Q  45 tgcttgattaacatttactttttgatacactatacaccagttcagagtttcatc 98  Q
    |||| |||| |||||||||||||||||||||||| ||||| | |||||||||||    
T  13738513 tgctagattgacatttactttttgatacactatataccagatgagagtttcatc 13738566  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 13751942 - 13751995
Alignment:
Q  45 tgcttgattaacatttactttttgatacactatacaccagttcagagtttcatc 98  Q
    |||| |||||||||||| |||||||||||||||| ||||| | |||||||||||    
T  13751942 tgctagattaacatttattttttgatacactatataccagatgagagtttcatc 13751995  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 13765345 - 13765398
Alignment:
Q  45 tgcttgattaacatttactttttgatacactatacaccagttcagagtttcatc 98  Q
    |||| |||||||||||| |||||||||||||||| ||||| | |||||||||||    
T  13765345 tgctagattaacatttattttttgatacactatataccagatgagagtttcatc 13765398  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 275 - 328
Target Start/End: Complemental strand, 35080010 - 35079957
Alignment:
Q  275 ttaaaattttatgtaccttgcttaggttcaacagatttagcatgagagcgcttc 328  Q
    ||||||| |||||||||||||| |||||||| ||||||||||||||||||||||    
T  35080010 ttaaaatgttatgtaccttgctcaggttcaatagatttagcatgagagcgcttc 35079957  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 35080321 - 35080260
Alignment:
Q  22 caacatttcattcaaaaataagatgcttgattaacatttactttttgatacactatacacca 83  Q
    |||||||||||||||||| | | |||| |||||||||||||| |||||||| ||||||||||    
T  35080321 caacatttcattcaaaaagagggtgctagattaacatttactgtttgatacgctatacacca 35080260  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 15607238 - 15607184
Alignment:
Q  51 attaacatttactttttgatacactatacaccagttcagagtttcatctctttca 105  Q
    |||||||||||||||||||||||||||| |  || | ||||||||||||||||||    
T  15607238 attaacatttactttttgatacactatatagtagataagagtttcatctctttca 15607184  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 15626159 - 15626105
Alignment:
Q  51 attaacatttactttttgatacactatacaccagttcagagtttcatctctttca 105  Q
    ||||||||||| |||||||||||||||| |  || | ||||||||||||||||||    
T  15626159 attaacatttaatttttgatacactatatagtagataagagtttcatctctttca 15626105  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 15638758 - 15638704
Alignment:
Q  51 attaacatttactttttgatacactatacaccagttcagagtttcatctctttca 105  Q
    |||||||||||||||||||||| ||||| |  || | ||||||||||||||||||    
T  15638758 attaacatttactttttgatactctatatagtagataagagtttcatctctttca 15638704  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 15649919 - 15649865
Alignment:
Q  51 attaacatttactttttgatacactatacaccagttcagagtttcatctctttca 105  Q
    ||||||||||||| |||||||||||||| |  || | ||||||||||||||||||    
T  15649919 attaacatttactgtttgatacactatatagtagataagagtttcatctctttca 15649865  T

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