View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17640_low_23 (Length: 378)
Name: NF17640_low_23
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 10 - 361
Target Start/End: Complemental strand, 4138155 - 4137804
Alignment:
| Q |
10 |
attattctttacaaaagtgaggattttgttaagtggatagtggatcctatacctttctttgcaacagatgataccggagtttgtgaatgtccagannnnn |
109 |
Q |
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| T |
4138155 |
attattctttacaaaagtgaggattttgttaagtggatagtggatcctatacctttctttgcaacagatgataccggagtttgtgaatgtccagattttt |
4138056 |
T |
|
| Q |
110 |
nncctgtgtatatcaataacacaaatggagttgatacaactatggaaaattcaagtgttagacatgtcttgaagataagctatctacgtagacgtcatga |
209 |
Q |
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| T |
4138055 |
ttcctgtgtatatcaataacacaaatggagttgatacaactatggaaaattcaagtgttagacatgtcttgaagataagctatctacgtagacgtcatga |
4137956 |
T |
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| Q |
210 |
ctattactttattggaaaatatgtatctgataaggaagagtttgttcctgatgtaaaatatactggaacttggaaggaattgagatttgactatggaaag |
309 |
Q |
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| T |
4137955 |
ctattactttattggaaaatatgtatctgataaggaagagtttgttcctgatgtaaaatatactggaacttggaaggaattgagatttgactatggaaag |
4137856 |
T |
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| Q |
310 |
gtttatgcttcaaagtcattttttgaccatgctaagaacaggagaatattat |
361 |
Q |
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| T |
4137855 |
gtttatgcttcaaagtcattttttgaccatgctaagaacaggagaatattat |
4137804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 10 - 361
Target Start/End: Complemental strand, 4129439 - 4129083
Alignment:
| Q |
10 |
attattctttacaaaagtgaggattttgttaagtggatagtggatcctatacctttctttgcaacagatgataccggagtttgtgaatgtccagannnnn |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4129439 |
attattctttacaaaagtgaggattttgttaagtggatagtggatcctatacctttctttgcaacagatgataccggagtttgtgaatgtccggattttt |
4129340 |
T |
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| Q |
110 |
nncctgtgtatatcaataacacaaatggagttgatacaactatggaaaattcaagtgttagacatgtcttgaagataagctatctacgtagacgtcatga |
209 |
Q |
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| T |
4129339 |
ttactgtgtatatcaatagtacaaatggggtggatacaactatggaaaattcaagtgttagacatgtctt-aaaataagctatttccgtagacatcttga |
4129241 |
T |
|
| Q |
210 |
ctattactttattggaaaatatgta------tctgataaggaagagtttgttcctgatgtaaaatatactggaacttggaaggaattgagatttgactat |
303 |
Q |
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|| |||||||||||||| |||||| |||||| ||||| | ||| ||||||||||||| ||||| |||||||| || || || |||||||||||| |
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| T |
4129240 |
cttctactttattggaaactatgtatctgattctgatcaggaaaaatttattcctgatgtaaattatacaggaacttgcaaagacttaagatttgactat |
4129141 |
T |
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| Q |
304 |
ggaaaggtttatgcttcaaagtcattttttgaccatgctaagaacaggagaatattat |
361 |
Q |
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|| |||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
4129140 |
ggccttttttatgcttcaaagtcattttttgactatgctaagaataggagaatattat |
4129083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 12 - 361
Target Start/End: Complemental strand, 4142893 - 4142538
Alignment:
| Q |
12 |
tattctttacaaaagtgaggattttgttaagtggatagtggatcctatacctttctttgcaacagatgataccggagtttgtgaatgtccagannnnnnn |
111 |
Q |
| |
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||||||||||| |||||||||||||||||| ||||| || ||||||| || |||| ||||||||||| |||||| |||||||||||||| || |
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| T |
4142893 |
tattctttacagaagtgaggattttgttaattggattgtagatcctaatccattctatgcaacagatggtaccggtgtttgtgaatgtccggattttttt |
4142794 |
T |
|
| Q |
112 |
cctgtgtatatcaataacacaaatggagttgatacaactatggaaaattcaagtgttagacatgtcttgaagataagctatctacgtagacgtcatgact |
211 |
Q |
| |
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|||||||||||||||| || ||||| || |||||| || |||||||||||||||||||||||||||| |||||||| ||||||| ||| ||||||| | |
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| T |
4142793 |
cctgtgtatatcaatagtactaatggggtggatacatctgtggaaaattcaagtgttagacatgtctttaagataagttatctactaagatgtcatgatt |
4142694 |
T |
|
| Q |
212 |
attactttattggaaaatatgtatc------tgataaggaagagtttgttcctgatgtaaaatatactggaacttggaaggaattgagatttgactatgg |
305 |
Q |
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| ||||| ||||| ||||||||||| |||| ||||| ||||| ||||||||| ||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
4142693 |
actacttcattgggaaatatgtatctgattctgatcaggaaaagtttattcctgatgaaaaatttactggaacttggaaggaattgatatttgactatgg |
4142594 |
T |
|
| Q |
306 |
aaaggtttatgcttcaaagtcattttttgaccatgctaagaacaggagaatattat |
361 |
Q |
| |
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|| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4142593 |
taatttttatgcttcaaagtcattttttgactatgctaagaacaggagaatattat |
4142538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 13 - 359
Target Start/End: Complemental strand, 4118244 - 4117898
Alignment:
| Q |
13 |
attctttacaaaagtgaggattttgttaagtggatagtggatcctatacctttctttgcaacagatgataccggagtttgtgaatgtccagannnnnnnc |
112 |
Q |
| |
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||||||||| ||||||||||||| ||||| |||| |||| |||| | || || |||||||||||| |||| |||||||||||||||||||| | |
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| T |
4118244 |
attctttaccaaagtgaggatttcgttaattggacagtgaatccaaatccattttttgcaacagataatactggagtttgtgaatgtccagacttttttc |
4118145 |
T |
|
| Q |
113 |
ctgtgtatatcaataacacaaatggagttgatacaactatggaaaattcaagtgttagacatgtcttgaagataagctatctacgtagacgtcatgacta |
212 |
Q |
| |
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||||||||||||||| |||||||| || |||||| || |||| |||||||||||||| ||||| |||||||||||||||||| | | || |||||||| |
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| T |
4118144 |
ctgtgtatatcaatagtacaaatggggtggatacatctgtggataattcaagtgttaggcatgttttgaagataagctatctaagaaaacagcatgacta |
4118045 |
T |
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| Q |
213 |
ttactttattggaaaatatgtatctgataaggaagagtttgttcctgatgtaaaatatactggaacttggaaggaattgagatttgactatggaaaggtt |
312 |
Q |
| |
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|| ||| |||| |||||||| |||||||||||| | ||||||||||||||| | | ||| |||||| | || || || |||||||||||||| || || |
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| T |
4118044 |
ctattttcttggtaaatatgtttctgataaggaaaactttgttcctgatgtagagtttacaggaactagtaaagatttaagatttgactatggtaaattt |
4117945 |
T |
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| Q |
313 |
tatgcttcaaagtcattttttgaccatgctaagaacaggagaatatt |
359 |
Q |
| |
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||||||||||||||||||||||| |||||||||| || |||||||| |
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| T |
4117944 |
tatgcttcaaagtcattttttgattatgctaagaatagaagaatatt |
4117898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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