View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17640_low_26 (Length: 355)
Name: NF17640_low_26
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 22 - 345
Target Start/End: Complemental strand, 31120735 - 31120412
Alignment:
| Q |
22 |
agcgctatttccacctttgtttgagtaatttcctgaaagaatccaaactgaaactttactatataaatctagacattaaaaagtgatatgtttcctttat |
121 |
Q |
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| T |
31120735 |
agcgctatttccacctttgtttgagtaatttcctgaaagaatccaaattgaaactttactatataaatctagacattaaaaagtgatatgtttcctttat |
31120636 |
T |
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| Q |
122 |
gtagacaagttttgaggttggaattaactcaagatggcatatatattttgtactctccatgtcaaactagtatatgtttaacgaacctggtgctccataa |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31120635 |
gtagacaagttttgaggttggaattaactcaagatggcatatatattttgtactctccatgtcaaactagtatatgtttaacgaacctggtgctccataa |
31120536 |
T |
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| Q |
222 |
gtattggatcccatgtcgtgccttgttgaatctctccatccaccctaaagttccaagatagcgacagtatatgattagtaacatgttaactagctataag |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||| |
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| T |
31120535 |
gtattggatcccatgtcgtgccttgttgaatctctccatccaccctaaagttccaagacagtgacagtatatgattagtaacatgtcaactagctataag |
31120436 |
T |
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| Q |
322 |
agtaatgatactcatacacctatg |
345 |
Q |
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|||||||||||||||||||||||| |
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| T |
31120435 |
agtaatgatactcatacacctatg |
31120412 |
T |
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