View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17640_low_27 (Length: 349)
Name: NF17640_low_27
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 122 - 324
Target Start/End: Complemental strand, 2289161 - 2288959
Alignment:
| Q |
122 |
ttatattgaaaatgagagaaaagagaaactatatcaacatacacttacaaaattcaaaaatcagtaatgagaattcaggaaaatttgaataaattaaact |
221 |
Q |
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| T |
2289161 |
ttatattgaaaatgagagaaaagagaaactaaatcaacatacacttacaaaattcaaaaatcagtaatgagaattcaggaaaatttgaataaattaaact |
2289062 |
T |
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| Q |
222 |
gattcagaataacatatcaagagagagagaatgaaaacaaaatcctaacttacattcttcacctagtttcaatggggagaccatggcactacgcttgcct |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2289061 |
gattcagaataacatatcaagagagagagaatgaaaacaaaatcctaacttacattcttcacctagtttcaatggggagaccatggcactacgcttgcct |
2288962 |
T |
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| Q |
322 |
ata |
324 |
Q |
| |
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||| |
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| T |
2288961 |
ata |
2288959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 154 - 324
Target Start/End: Original strand, 2255391 - 2255563
Alignment:
| Q |
154 |
atcaacatacacttacaaaattcaaaaatcagtaatgagaattcaggaaaatttgaataaattaaactgattcagaat--aacatatcaagagagagaga |
251 |
Q |
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|||||||||||| |||||||||||||||| | |||||||||||||||||||| ||||||||| |||||||||||||| ||||||||| ||||||||| |
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| T |
2255391 |
atcaacatacacatacaaaattcaaaaataaaaaatgagaattcaggaaaattggaataaatttaactgattcagaatttaacatatcacaagagagaga |
2255490 |
T |
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| Q |
252 |
atgaaaacaaaatcctaacttacattcttcacctagtttcaatggggagaccatggcactacgcttgcctata |
324 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
2255491 |
atgaaaaccaaatcctaacttaccttcttcacctagtttcaatggggagaccatggcactacacttgtctata |
2255563 |
T |
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