View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17640_low_33 (Length: 318)
Name: NF17640_low_33
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_low_33 |
 | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
| [»] scaffold0042 (3 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 17 - 315
Target Start/End: Original strand, 22828127 - 22828425
Alignment:
| Q |
17 |
agaactcacatgtatttactgagatttgcttcaagcttctaagcttctacaccaaaccctagcccatagcttatcaccaacaactcgattccttggttca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22828127 |
agaactcacatgtatttactgagatttgcttcaagcttctaagcttctacaccaaaccctagcccatagcttatcaccaacaactcgattccttggttca |
22828226 |
T |
|
| Q |
117 |
gcacaaaacccatatcagtcgccttacttcaaactccactccagacctcaataccgaacctaaaatcatgaaaccggtacgaaaatgtcgggaattttgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22828227 |
gcacaaaacccatatcagtcgccttacttcaaactccacttcagacctcaataccgaacctaaaatcatgaaaccggtacgaaaatgtcgggaattttgt |
22828326 |
T |
|
| Q |
217 |
tagctaaccatagcaataaagttcactttccaagttacagagaaagagttattaccgttttagtgaagcgctgtcccaaaacccgtaaacaaattccag |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22828327 |
tagctaaccatagcaataaagttcactttccaagttacagagaaagagttattaccgttttagtgaagcgctgtcccaaaacccgtaaacaaattccag |
22828425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 315
Target Start/End: Complemental strand, 3556036 - 3555736
Alignment:
| Q |
18 |
gaactcacatgtatttactgagatttgcttcaagcttctaagcttctacaccaaaccctagcccatagcttatcaccaacaactcgattccttggttcag |
117 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3556036 |
gaactcacgtgtatttactgagatttgcttcaagctcctaagcttctacaccaaaccctaccccatagcttatcaccaacaactcgattccttggttcag |
3555937 |
T |
|
| Q |
118 |
cacaaaacccatatcagtcgccttacttcaaactccactccagacctcaataccgaacctaaaatcatgaaaccggtacgaaaatgtcgggaattttgtt |
217 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||| ||||||||||| |||| ||| |
|
|
| T |
3555936 |
cacaaaacccatatcagtccccttacttcaaactctcctccaggcctcaatacggaacctaaaatcatgaaaccggtatcaaaatgtcgggcatttcgtt |
3555837 |
T |
|
| Q |
218 |
agctaaccatagcaataaagttcac---tttccaagttacagagaaagagttattaccgttttagtgaagcgctgtcccaaaacccgtaaacaaattcca |
314 |
Q |
| |
|
|||||||||||||| ||||||||| || ||||||||| || |||||| || ||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
3555836 |
ggctaaccatagcaacaaagttcacctgatttgaagttacagggagagagttcttcccgttttagcgaagccctgtcccaaaacccgtaaacaaattcca |
3555737 |
T |
|
| Q |
315 |
g |
315 |
Q |
| |
|
| |
|
|
| T |
3555736 |
g |
3555736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 315
Target Start/End: Complemental strand, 380380 - 380078
Alignment:
| Q |
17 |
agaactcacatgtatttactgagatttgcttcaagcttctaagcttctacaccaaaccctagcccatagcttatcaccaacaactcgattccttgg-ttc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
380380 |
agaactcacatgtatttactgagatttgcttcaagctcctaagcttctacaccaaaccctagcccatagcttatcacaaacaactcgattccttgggttc |
380281 |
T |
|
| Q |
116 |
agcacaaaacccatatcagtcgccttacttcaaactccactccagacctcaataccgaacctaaaatcatgaaaccggtacgaaaatgtcgggaattttg |
215 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||||| |||||| ||||||| | ||||||||||||||||||||| ||| |||||||||||||||| | |
|
|
| T |
380280 |
aacacaaaacccatatcagtccccttacttcaaactctcctccaggcctcaatgctgaacctaaaatcatgaaaccgataccaaaatgtcgggaatttcg |
380181 |
T |
|
| Q |
216 |
ttagctaaccatagcaataaagttcac---tttccaagttacagagaaagagttattaccgttttagtgaagcgctgtcccaaaacccgtaaacaaattc |
312 |
Q |
| |
|
||||||||||||||||| ||||||||| || ||||||||| | |||||| |||||||||| ||||||| |||||||||||||| ||| ||||||| |
|
|
| T |
380180 |
ttagctaaccatagcaacaaagttcacgtgatttgaagttacagcaagagagttcttaccgttttggtgaagccctgtcccaaaacccctaaccaaattc |
380081 |
T |
|
| Q |
313 |
cag |
315 |
Q |
| |
|
||| |
|
|
| T |
380080 |
cag |
380078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 187 - 315
Target Start/End: Original strand, 22806799 - 22806930
Alignment:
| Q |
187 |
aaaccggtacgaaaatgtcgggaattttgttagctaaccatagcaataaagttcactt---tccaagttacagagaaagagttattaccgttttagtgaa |
283 |
Q |
| |
|
|||| ||||| |||| ||| | ||||| |||| |||||||||||| |||| |||||| ||||||||||||||| | |||| |||| ||||||||| | |
|
|
| T |
22806799 |
aaactggtaccaaaacgtccgtaatttcgttatctaaccatagcattaaaaatcacttgattccaagttacagagagaaagttcttactgttttagtgga |
22806898 |
T |
|
| Q |
284 |
gcgctgtcccaaaacccgtaaacaaattccag |
315 |
Q |
| |
|
|| |||||||||||||||||| |||||||||| |
|
|
| T |
22806899 |
gccctgtcccaaaacccgtaaccaaattccag |
22806930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 315
Target Start/End: Complemental strand, 23307706 - 23307405
Alignment:
| Q |
17 |
agaactcacatgtatttactgagatttgcttcaagcttctaagcttctacaccaaaccctagcccatagcttatcaccaacaactcgattccttggttca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
23307706 |
agaactcacatgtatttactgagatttgcttcaagctcctaagcttctacaccaaaccctagcccatagcttatcaccaacaaatttattccttggttca |
23307607 |
T |
|
| Q |
117 |
gcacaaaacccatatcagtcgccttacttcaaactccactccagacctcaataccgaacctaaaatcatgaaaccggtacgaaaatgtcgggaattttgt |
216 |
Q |
| |
|
||||||||| | |||||||| ||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| |||| || |
|
|
| T |
23307606 |
gcacaaaactcgtatcagtccccttacttcaaactctcctccaggcctcaatactgaacctaaaatcatgaaaccggtaccaaaatgtcgggcatttcgt |
23307507 |
T |
|
| Q |
217 |
tagctaaccatagcaataaagttcac---tttccaagttacagagaaagagttattaccgttttagtgaagcgctgtcccaaaacccgtaaacaaattcc |
313 |
Q |
| |
|
||||||||||||| || ||||||||| || |||| |||| || |||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23307506 |
tagctaaccatagaaacaaagttcacatgatttgaagtaacagggagagagttcttaccgttttagtgaagccctgtcccaaaacccgtaaacaaattcc |
23307407 |
T |
|
| Q |
314 |
ag |
315 |
Q |
| |
|
|| |
|
|
| T |
23307406 |
ag |
23307405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 296
Target Start/End: Complemental strand, 29685018 - 29684903
Alignment:
| Q |
184 |
atgaaaccggtacgaaaatgtcgggaattttgttagctaaccatagcaataaagttcactt---tccaagttacagagaaagagttattaccgttttagt |
280 |
Q |
| |
|
||||||| ||||| |||| ||| ||||||| |||| |||||||||||| ||| |||||| |||||||||||| || ||||| ||||||||||||| |
|
|
| T |
29685018 |
atgaaactggtaccaaaacgtccggaatttcgttatctaaccatagcatcaaaaatcacttgattccaagttacagggagtgagttcttaccgttttagt |
29684919 |
T |
|
| Q |
281 |
gaagcgctgtcccaaa |
296 |
Q |
| |
|
| ||| |||||||||| |
|
|
| T |
29684918 |
ggagccctgtcccaaa |
29684903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 296
Target Start/End: Complemental strand, 25718001 - 25717886
Alignment:
| Q |
184 |
atgaaaccggtacgaaaatgtcgggaattttgttagctaaccatagcaataaagttcact---ttccaagttacagagaaagagttattaccgttttagt |
280 |
Q |
| |
|
||||||| |||||||||| ||| ||||||| ||||||||||||||||| ||| ||||| ||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
25718001 |
atgaaactggtacgaaaacgtccggaatttcgttagctaaccatagcatcaaaaatcacttgattccaagttacagggagtgagttcttaccgttttagt |
25717902 |
T |
|
| Q |
281 |
gaagcgctgtcccaaa |
296 |
Q |
| |
|
| ||| |||||||||| |
|
|
| T |
25717901 |
ggagctctgtcccaaa |
25717886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 249 - 315
Target Start/End: Complemental strand, 15560972 - 15560907
Alignment:
| Q |
249 |
agttacagagaaagagttattaccgttttagtgaagcgctgtcccaaaacccgtaaacaaattccag |
315 |
Q |
| |
|
||||||| ||| |||||| ||||| |||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
15560972 |
agttacacagagagagttcttaccattttagtgaagccctgtcccaaaacccgt-aacaaattccag |
15560907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 296
Target Start/End: Complemental strand, 19053279 - 19053164
Alignment:
| Q |
184 |
atgaaaccggtacgaaaatgtcgggaattttgttagctaaccatagcaataaagttcactt---tccaagttacagagaaagagttattaccgttttagt |
280 |
Q |
| |
|
||||||| ||||| |||| ||| |||||| ||||||||||||||||| ||| |||||| |||||||||||| || ||||| |||||| |||||| |
|
|
| T |
19053279 |
atgaaactggtaccaaaacgtccagaatttcgttagctaaccatagcatcaaaaatcacttgattccaagttacagggagtgagttcttaccgatttagt |
19053180 |
T |
|
| Q |
281 |
gaagcgctgtcccaaa |
296 |
Q |
| |
|
| ||| |||||||||| |
|
|
| T |
19053179 |
ggagccctgtcccaaa |
19053164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 308
Target Start/End: Complemental strand, 17146690 - 17146564
Alignment:
| Q |
185 |
tgaaaccggtacgaaaatgtcgggaattttgttagctaaccatagcaataaagttcactt---tccaagttacagagaaagagttattaccgttttagtg |
281 |
Q |
| |
|
|||||| ||||| |||| ||| ||||||| |||| |||||| ||||| |||| |||||| |||||| |||| || | |||| |||| ||||||||| |
|
|
| T |
17146690 |
tgaaactggtaccaaaacgtccggaatttcgttatctaaccgtagcattaaaaatcacttgattccaagctacattgagaaagttcttacggttttagtg |
17146591 |
T |
|
| Q |
282 |
aagcgctgtcccaaaacccgtaaacaa |
308 |
Q |
| |
|
|| |||||||||||||||||||||| |
|
|
| T |
17146590 |
aaatcctgtcccaaaacccgtaaacaa |
17146564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 315
Target Start/End: Original strand, 38276 - 38402
Alignment:
| Q |
192 |
ggtacgaaaatgtcgggaattttgttagctaaccatagcaataaagttcactt---tccaagttacagagaaagagttattaccgttttagtgaagcgct |
288 |
Q |
| |
|
||||| |||||||| | |||||||||| | |||||||||| ||| |||||| ||| |||||||| || |||||| ||||| |||||||| ||| || |
|
|
| T |
38276 |
ggtaccaaaatgtccgtaattttgttatcgaaccatagcatcaaaaatcacttgattccgagttacagggagagagttcttaccattttagtggagccct |
38375 |
T |
|
| Q |
289 |
gtcccaaaacccgtaaacaaattccag |
315 |
Q |
| |
|
|||||||||||||||| |||||||||| |
|
|
| T |
38376 |
gtcccaaaacccgtaatcaaattccag |
38402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 315
Target Start/End: Complemental strand, 14801451 - 14801325
Alignment:
| Q |
192 |
ggtacgaaaatgtcgggaattttgttagctaaccatagcaataaagttcactt---tccaagttacagagaaagagttattaccgttttagtgaagcgct |
288 |
Q |
| |
|
||||| |||||||| | |||||||||| | |||||||||| ||| |||||| ||| |||||||| || |||||| ||||| |||||||| ||| || |
|
|
| T |
14801451 |
ggtaccaaaatgtccgtaattttgttatcgaaccatagcatcaaaaatcacttgattccgagttacagggagagagttcttaccattttagtggagccct |
14801352 |
T |
|
| Q |
289 |
gtcccaaaacccgtaaacaaattccag |
315 |
Q |
| |
|
|||||||||||||||| |||||||||| |
|
|
| T |
14801351 |
gtcccaaaacccgtaatcaaattccag |
14801325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 249 - 315
Target Start/End: Complemental strand, 7128 - 7062
Alignment:
| Q |
249 |
agttacagagaaagagttattaccgttttagtgaagcgctgtcccaaaacccgtaaacaaattccag |
315 |
Q |
| |
|
||||||||||| |||||||| ||| |||||| ||||| | ||||||||||||||||||||| ||||| |
|
|
| T |
7128 |
agttacagagagagagttataaccattttagcgaagcccggtcccaaaacccgtaaacaaaatccag |
7062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 249 - 315
Target Start/End: Complemental strand, 9060 - 8994
Alignment:
| Q |
249 |
agttacagagaaagagttattaccgttttagtgaagcgctgtcccaaaacccgtaaacaaattccag |
315 |
Q |
| |
|
||||||||||| |||||| ||||| |||||| ||||| | ||||||||||||||||||||| ||||| |
|
|
| T |
9060 |
agttacagagagagagttcttaccattttagcgaagcccagtcccaaaacccgtaaacaaaatccag |
8994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 249 - 315
Target Start/End: Complemental strand, 14540 - 14474
Alignment:
| Q |
249 |
agttacagagaaagagttattaccgttttagtgaagcgctgtcccaaaacccgtaaacaaattccag |
315 |
Q |
| |
|
||||||||||| |||||||| ||| |||||| ||||| | ||||||||||||||||||||| ||||| |
|
|
| T |
14540 |
agttacagagagagagttataaccattttagcgaagcccggtcccaaaacccgtaaacaaaatccag |
14474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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