View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17640_low_35 (Length: 295)
Name: NF17640_low_35
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 35275383 - 35275180
Alignment:
| Q |
18 |
cttattgctaataaaggtcttctacattctgatcaagttcttttcaatggtggtggttctcaaatttctttggttaggaagtatagtagagatggtgctg |
117 |
Q |
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| T |
35275383 |
cttattgctaataaaggtcttctacattctgatcaagttcttttcaatggtggtggttctcaaatttctttggttaggaagtatagtagagatggtgctg |
35275284 |
T |
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| Q |
118 |
ctttttctagagactttgctgctgctatggtgaagatgagtaaaattagtcctcttactgggactaatggtgagatcagaaagaattgcaggattgtgaa |
217 |
Q |
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| T |
35275283 |
ctttttctagagactttgctgctgctatggtgaagatgagtaaaattagtcctcttactgggactaatggtgagatcagaaagaattgcaggattgtgaa |
35275184 |
T |
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| Q |
218 |
ttga |
221 |
Q |
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|||| |
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| T |
35275183 |
ttga |
35275180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 35289491 - 35289296
Alignment:
| Q |
22 |
ttgctaataaaggtcttctacattctgatcaagttcttttcaatggtggtggttctcaaatttctttggttaggaagtatagtagagatggtgctgcttt |
121 |
Q |
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| T |
35289491 |
ttgctaataaaggacttcttcattctgatcaagctcttttcaatggtgttggttctcaagtttctttggttaggacttatagtagaaataatattgcttt |
35289392 |
T |
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| Q |
122 |
ttctagagactttgctgctgctatggtgaagatgagtaaaattagtcctcttactgggactaatggtgagatcagaaagaattgcaggattgtgaa |
217 |
Q |
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| T |
35289391 |
taaaagagactttgcagctgctatggtgaagatgagtagaattagtcctctaactgggactaatggggagattagaaagaattgcaggcttgtgaa |
35289296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 22 - 219
Target Start/End: Complemental strand, 35280146 - 35279949
Alignment:
| Q |
22 |
ttgctaataaaggtcttctacattctgatcaagttcttttcaatggtggtggttctcaaatttctttggttaggaagtatagtagagatggtgctgcttt |
121 |
Q |
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||||||||||||| ||||| |||||||||||| ||||||||||||| |||||||| | |||||||||||||| ||||||| | ||||| |||||| |
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| T |
35280146 |
ttgctaataaaggacttcttaattctgatcaagcacttttcaatggtgttggttctccagtttctttggttagggcttatagtataaatggttttgcttt |
35280047 |
T |
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| Q |
122 |
ttctagagactttgctgctgctatggtgaagatgagtaaaattagtcctcttactgggactaatggtgagatcagaaagaattgcaggattgtgaatt |
219 |
Q |
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| T |
35280046 |
tagaagagactttgcttttgctatggtgaagatgagcagaattagtcctctcacagggactaatggggaaattagaaagaattgcagacttgtgaatt |
35279949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 30 - 221
Target Start/End: Complemental strand, 35307281 - 35307093
Alignment:
| Q |
30 |
aaaggtcttctacattctgatcaagttcttttcaatggtggtggttctcaaatttctttggttaggaagtatagtagagatggtgctgctttttctagag |
129 |
Q |
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| T |
35307281 |
aaaggtcttttccattctgatcaagctcttttcaataatggg---tctcaagataatttggttaggagttatagtaccaatggtgctactttttctagag |
35307185 |
T |
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| Q |
130 |
actttgctgctgctatggtgaagatgagtaaaattagtcctcttactgggactaatggtgagatcagaaagaattgcaggattgtgaattga |
221 |
Q |
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| T |
35307184 |
actttgccgttgctatggtgaaactgagtaaaattagtcctctaactgggactaatggggagattagaaagaattgcaggcttgtgaattga |
35307093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 35311543 - 35311436
Alignment:
| Q |
114 |
gctgctttttctagagactttgctgctgctatggtgaagatgagtaaaattagtcctcttactgggactaatggtgagatcagaaagaattgcaggattg |
213 |
Q |
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| T |
35311543 |
gctgctttttctacagactttgctgctgctatggtgaaactgagtaaaatcagtcctctcactgggactaatggggagatcagaaagaattgtaggcttg |
35311444 |
T |
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| Q |
214 |
tgaattga |
221 |
Q |
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|||||||| |
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| T |
35311443 |
tgaattga |
35311436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 221
Target Start/End: Complemental strand, 35322282 - 35322094
Alignment:
| Q |
30 |
aaaggtcttctacattctgatcaagttcttttcaatggtggtggttctcaaatttctttggttaggaagtatagtagagatggtgctgctttttctagag |
129 |
Q |
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||||||||| | ||||||||||||| |||||||||| ||| |||||| | ||||||||||| ||||||| |||||||| ||||| |||| |
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| T |
35322282 |
aaaggtcttttccattctgatcaagctcttttcaataatggg---tctcaagataatttggttaggagttatagtaccaatggtgctacttttagaagag |
35322186 |
T |
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| Q |
130 |
actttgctgctgctatggtgaagatgagtaaaattagtcctcttactgggactaatggtgagatcagaaagaattgcaggattgtgaattga |
221 |
Q |
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| T |
35322185 |
actttgctgttgctatggtgaaactgagtaaaattaatcctctaactgggactaatggggagattagaaagaattgtaggcttgtgaattga |
35322094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 264 - 295
Target Start/End: Complemental strand, 35275133 - 35275102
Alignment:
| Q |
264 |
gagactaataatttgagggcatatcagcaatt |
295 |
Q |
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| T |
35275133 |
gagactaataatttgagggcatatcagcaatt |
35275102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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