View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17640_low_36 (Length: 289)
Name: NF17640_low_36
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 37 - 276
Target Start/End: Complemental strand, 40099293 - 40099050
Alignment:
| Q |
37 |
tacgttgttaacatggtcacgtaataaattttaaaatgtgcataaacttactatatatatggttgaccaaaaaaattatgcggttgaccnnnnnnnnnnc |
136 |
Q |
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| T |
40099293 |
tacgttgttaacatggtcacgtaataaattttaaaatgtgcataaacttactatatatatggttgaccaaaaaaattatgcggttgaccaaaaaaaaaac |
40099194 |
T |
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| Q |
137 |
ttactatggat----atattgaatcgtttcttacatttgagccagatttaattgatagcatgtataaggtgtgtaatgaacatatataaaatcaaatgat |
232 |
Q |
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| T |
40099193 |
ttactatggatggatatattgaatcgtttcttacatttgagccagatttaattgatagcatgtataaggtgtgtaatgaacatatataaaatcaaatgat |
40099094 |
T |
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| Q |
233 |
gaaagtgatcttctatagagagattcaaatttgtaacactacct |
276 |
Q |
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| T |
40099093 |
gaaagtgatcttctatagagagattcaaatttgtaacactacct |
40099050 |
T |
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