View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17640_low_39 (Length: 279)
Name: NF17640_low_39
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 43436374 - 43436112
Alignment:
| Q |
1 |
gtttcttttggtacttatataactcactttgttaaaaagttatatattggatgagatatggtcttatatataatgtgttaataagtgggaggcactcatc |
100 |
Q |
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| T |
43436374 |
gtttcttttggtagttatataactcattttgttaaaaagttctatattggatgagatatggtcttatatgtaatgtgttaataagtgggaggaactcatc |
43436275 |
T |
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| Q |
101 |
atttataagtcggttttgtaaggatgagcaagtcttagtattgaagttgtttggagtctaatattgctcaaatttttaagttattggatgtataaatgtg |
200 |
Q |
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| T |
43436274 |
acttataagtcggttttgtgaggatgagcaagtctcagtattgaagttgtttggagtctgacattgctcaaatttctaagttattggatgtataaatgtg |
43436175 |
T |
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| Q |
201 |
tttggacatcctcaccctttgagctgacttttgggataatccaaaccgatttaacgtggtatc |
263 |
Q |
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| T |
43436174 |
tttggacatcctcaccctttgagctgacttttgggataatccaaaccgatttaacgtggtatc |
43436112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 211
Target Start/End: Complemental strand, 34262323 - 34262246
Alignment:
| Q |
135 |
ttagtattgaagttgt-ttggagtctaatattgctcaaatttttaagttattggatgtataaatgtgtttggacatcc |
211 |
Q |
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| T |
34262323 |
ttagtattaaagttgtattggagtctcacattgctctagttttcaagttgttgaatgtataaatgtgtttgaacatcc |
34262246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 2717791 - 2717723
Alignment:
| Q |
138 |
gtattgaagttgt-ttggagtctaatattgctcaaatttttaagttattggatgtataaatgtgtttgg |
205 |
Q |
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| T |
2717791 |
gtattgaagttgtattggagtcccacattgctcaagttcctgagctattggatgtataaatgtgtttgg |
2717723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 23734879 - 23734946
Alignment:
| Q |
138 |
gtattgaagttgt-ttggagtctaatattgctcaaatttttaagttattggatgtataaatgtgtttg |
204 |
Q |
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| T |
23734879 |
gtattgaagttgtattggagtctcatattgctcaaatttttggattattggatgtataaatgtgtttg |
23734946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 44019670 - 44019620
Alignment:
| Q |
187 |
gatgtataaatgtgtttggacatcctcaccctttgagctgacttttgggat |
237 |
Q |
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| T |
44019670 |
gatgtataaatgtgtttgggcaccctcatcctttgagctaacttttgggat |
44019620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 16413040 - 16412996
Alignment:
| Q |
189 |
tgtataaatgtgtttggacatcctcaccctttgagctgacttttg |
233 |
Q |
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| T |
16413040 |
tgtataaatgtgcttggatatcctcatcctttgagctggcttttg |
16412996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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