View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17640_low_4 (Length: 668)
Name: NF17640_low_4
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 7278899 - 7278608
Alignment:
| Q |
1 |
gaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtga |
100 |
Q |
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| T |
7278899 |
gaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtga |
7278800 |
T |
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| Q |
101 |
atgaggatggcgaggtgaattgtatggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaaatgggacctttgatgaatgaggatgg |
200 |
Q |
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| T |
7278799 |
atgaggatggtgaggtgaattgtatggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaaatgggacctttgatgaatgaggatgg |
7278700 |
T |
|
| Q |
201 |
tagcgagggtaaatgtgtgaa---agaatataattttttgatgaaggaggggggtggtgaagatgaggaaggtgacaaagtggaagctttat |
289 |
Q |
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| T |
7278699 |
tagcgagggtaaatgtgtgaaagaagaagatcattttttgatgaaggaggggggtggtgaagatgaggaaggtgacaaagtggaagctttat |
7278608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 7374940 - 7375231
Alignment:
| Q |
1 |
gaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7374940 |
gaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtga |
7375039 |
T |
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| Q |
101 |
atgaggatggcgaggtgaattgtatggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaaatgggacctttgatgaatgaggatgg |
200 |
Q |
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| T |
7375040 |
atgaggatggcgaggtgaattgtatggagaaagaagagagggggtatgaagagaagaatgagggaggtgaaaaaatgggacctttgatgaatgaggatgg |
7375139 |
T |
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| Q |
201 |
tagcgagggtaaatgtgtga---aagaatataattttttgatgaaggaggggggtggtgaagatgaggaaggtgacaaagtggaagctttat |
289 |
Q |
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|||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7375140 |
tagcgagggtaaatgtgtgaaagaagaagatcattttttgatgaaggaggggggtggtgaagatgaggaaggtgacaaagtggaagctttat |
7375231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 348 - 646
Target Start/End: Complemental strand, 7278549 - 7278230
Alignment:
| Q |
348 |
tgaaaaatttgaagctttggggaatgaggagagcaatgaggatgtgaagaagatggaggtagaagagaaggaagagagtgtgggaacaagtttgggggag |
447 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7278549 |
tgaaaaatttgaagctttggggaatgaggagaacaatgaggatgtgaagaagatggaggtagaagagaaggaagagagtgtgggaacaagtttggtggag |
7278450 |
T |
|
| Q |
448 |
gaaggaattgaggaaagtgtggatgtgaaagaaga---------------aaatggatttgaggaggttaagg------aggaagaagatggagggaata |
526 |
Q |
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| T |
7278449 |
gaaggaattaaggaaagtgtagatgtgaaagaagaggagggtagaattggaaatgaatttgaggaggagaattgttataaggaagaagatggagggaata |
7278350 |
T |
|
| Q |
527 |
gaaaaatgttgaaaaggatgatggaggacaatgaaaagatgatggaaatgatgtcacaattatttgagaggaatgaaaagcaaacaacacttcttacatc |
626 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7278349 |
gaaaaatgttgaaaaggatgatggaggacaatgagaagatgatggaaatgatggcacaattatttgagaggaatgagaagcaaacaacacttcttacatc |
7278250 |
T |
|
| Q |
627 |
tctcacacaaagggtggagc |
646 |
Q |
| |
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||| |||||||| ||||||| |
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| T |
7278249 |
tcttacacaaagagtggagc |
7278230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 348 - 646
Target Start/End: Original strand, 7375290 - 7375609
Alignment:
| Q |
348 |
tgaaaaatttgaagctttggggaatgaggagagcaatgaggatgtgaagaagatggaggtagaagagaaggaagagagtgtgggaacaagtttgggggag |
447 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7375290 |
tgaaaaatttgaagctttggggaatgaggagaacaatgaggatgtgaagaagatggaggtagaagagaaggaagagagtgtgggaacaagtttggtggag |
7375389 |
T |
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| Q |
448 |
gaaggaattgaggaaagtgtggatgtgaaagaaga---------------aaatggatttgaggaggttaagg------aggaagaagatggagggaata |
526 |
Q |
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| T |
7375390 |
gaaggaattaaggaaagtgtagatgtgaaagaagaggagggtagaattggaaatgaatttgaggaggagaattgttataaggaagaagatggagggaata |
7375489 |
T |
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| Q |
527 |
gaaaaatgttgaaaaggatgatggaggacaatgaaaagatgatggaaatgatgtcacaattatttgagaggaatgaaaagcaaacaacacttcttacatc |
626 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7375490 |
gaaaaatgttgaaaaggatgatggaggacaatgagaagatgatggaaatgatggcacaattatttgagaggaatgagaagcaaacaacacttcttacatc |
7375589 |
T |
|
| Q |
627 |
tctcacacaaagggtggagc |
646 |
Q |
| |
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||| |||||||| ||||||| |
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| T |
7375590 |
tcttacacaaagagtggagc |
7375609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 7278593 - 7278543
Alignment:
| Q |
124 |
atggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaa |
174 |
Q |
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|||||| ||||||| ||||||||| | ||| |||||||||||||||||||| |
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| T |
7278593 |
atggaggaagaagatagggggtgtaaggaggagaatgagggaggtgaaaaa |
7278543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 7375246 - 7375296
Alignment:
| Q |
124 |
atggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaa |
174 |
Q |
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|||||| ||||||| ||||||||| | ||| |||||||||||||||||||| |
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| T |
7375246 |
atggaggaagaagatagggggtgtaaggaggagaatgagggaggtgaaaaa |
7375296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 7278576 - 7278520
Alignment:
| Q |
51 |
ggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtgaatgagga |
107 |
Q |
| |
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||||||| | |||||||||||||| ||| | ||| |||||||||||| ||||||||| |
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| T |
7278576 |
ggggtgtaaggaggagaatgagggaggtgaaaaatttgaagctttggggaatgagga |
7278520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 7375263 - 7375319
Alignment:
| Q |
51 |
ggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtgaatgagga |
107 |
Q |
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||||||| | |||||||||||||| ||| | ||| |||||||||||| ||||||||| |
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| T |
7375263 |
ggggtgtaaggaggagaatgagggaggtgaaaaatttgaagctttggggaatgagga |
7375319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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