View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17640_low_42 (Length: 269)
Name: NF17640_low_42
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 19181382 - 19181452
Alignment:
| Q |
15 |
acataaaggagccgttggacatcccgacaaggtcagcactctcagaaaacttcaatcctctgccactcact |
85 |
Q |
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| T |
19181382 |
acatcaaggagccgctggacatcccgacaaggtcaacactctcaggaaacttcaatcctctgccactcact |
19181452 |
T |
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Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 208 - 263
Target Start/End: Original strand, 19181812 - 19181867
Alignment:
| Q |
208 |
aaatggtccctacaaaaatactccctaacaaaaacgggcataaagtcccaccaaac |
263 |
Q |
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| T |
19181812 |
aaatggtccctacaaaaatcctccctaacaaaaacgggcataaagtcccaccaaac |
19181867 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 263
Target Start/End: Original strand, 12732177 - 12732243
Alignment:
| Q |
197 |
taggtaaccagaaatggtccctacaaaaatactccctaacaaaaacgggcataaagtcccaccaaac |
263 |
Q |
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| T |
12732177 |
taggtaacccaaaacggtccctaaaataatactcccaaacaaaaacgggcataatatcccagcaaac |
12732243 |
T |
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