View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17640_low_45 (Length: 259)
Name: NF17640_low_45
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 2675162 - 2675398
Alignment:
| Q |
1 |
aaatttaaaaataccttgcttacagctccgcaacttaagttatagtaacaaatttcccttggagttcagtcaactgaagttttacctgatcaagatacaa |
100 |
Q |
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| T |
2675162 |
aaatttaaaaataccttgcttacggcttcgcaacttaagttatagccacaaatttcccttggagttctgtcaactgaagttttacctgatcaagatacaa |
2675261 |
T |
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| Q |
101 |
agagtttaactaccaaacaattcaaataagttggctaattaaattgtaagaggaggtcaattaatcatatgcatcgaaattgtt---caaataaaatcat |
197 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||| |||||||| ||| |||||||| |
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| T |
2675262 |
agagtttaactaccaaacaattcaaataagtttgctaattaaattgtaagagtaggtcaat--------tgcatctaaattgttaaaaaaaaaaaatcat |
2675353 |
T |
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| Q |
198 |
atgcatcaaaacatatagttataaagcaattcacacaactaaatt |
242 |
Q |
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| T |
2675354 |
acgcatcaaaacatatagttataaagcaattcacacaactaaatt |
2675398 |
T |
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