View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17640_low_46 (Length: 255)
Name: NF17640_low_46
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 154 - 240
Target Start/End: Original strand, 22468135 - 22468221
Alignment:
| Q |
154 |
gcctgaaatcgaaattaatttatttgccaaaaaagaaactgacattaatgccgttctttctctgtaatattgaagctcagggtctgt |
240 |
Q |
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| T |
22468135 |
gcctgaaatcgaaattaatttatttgccaaaaaagtaactgacattaatgccgttctttctctgtaatattgaagctcagggtctgt |
22468221 |
T |
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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 22468007 - 22468084
Alignment:
| Q |
24 |
tcttcctaattttctgtatgcattaatttaattaggctcttcatttttaaaataaaaattattattttgttgaacctaaat |
104 |
Q |
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| T |
22468007 |
tcttactaattttctgtatgcatgaatttaattaggctcttca-ttttaaaat--aaattattattttgttgaacctaaat |
22468084 |
T |
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