View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17640_low_47 (Length: 248)

Name: NF17640_low_47
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17640_low_47
NF17640_low_47
[»] chr4 (3 HSPs)
chr4 (1-243)||(46767222-46767464)
chr4 (122-192)||(4670443-4670513)
chr4 (86-159)||(29808110-29808183)
[»] scaffold0041 (1 HSPs)
scaffold0041 (125-192)||(83897-83964)
[»] chr7 (1 HSPs)
chr7 (125-192)||(40882319-40882386)
[»] chr5 (1 HSPs)
chr5 (86-140)||(18605158-18605212)
[»] scaffold0127 (1 HSPs)
scaffold0127 (125-185)||(14603-14663)
[»] chr3 (1 HSPs)
chr3 (118-160)||(48601334-48601376)
[»] chr8 (1 HSPs)
chr8 (129-189)||(34492603-34492663)


Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 46767464 - 46767222
Alignment:
Q  1 tttccctcatttgctatcattgagcaggagggaatagtatatctcttatagtctccattgcctctcttactcgttaatgtttatttgtaaaatatgggct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46767464 tttccctcatttgctatcattgagcaggagggaatagtatatctcttatagtctccattgcctctcttactcgttaatgtttatttgtaaaatatgggct 46767365  T
Q  101 aattcctttgagctctctttgtatttgatttgtggttttagccgttttatcggttataccacctttatctattagaatctcatctctttcgatagaatgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  46767364 aattcctttgagctctctttgtatttgatttgtggttttagccgttttatcggttataccacctttatctattagaatctcatctctttcaatagaatgt 46767265  T
Q  201 cttcttcagttttgaagtttaaaatcttgaaattcttctcact 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  46767264 cttcttcagttttgaagtttaaaatcttgaaattcttctcact 46767222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 122 - 192
Target Start/End: Original strand, 4670443 - 4670513
Alignment:
Q  122 tatttgatttgtggttttagccgttttatcggttataccacctttatctattagaatctcatctctttcga 192  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||| |||| |||||||||||| |||||    
T  4670443 tatttgatttgtggttttagccgttttattggttataccgcctttatatattggaatctcatctcgttcga 4670513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 159
Target Start/End: Complemental strand, 29808183 - 29808110
Alignment:
Q  86 tgtaaaatatgggctaattcctttgagctctctttgtatttgatttgtggttttagccgttttatcggttatac 159  Q
    ||||||||||||||| || ||| ||||||   |||||| |||||||||||||||| ||||||| ||||||||||    
T  29808183 tgtaaaatatgggcttatccctctgagcttcgtttgtacttgatttgtggttttaaccgttttgtcggttatac 29808110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 83964 - 83897
Alignment:
Q  125 ttgatttgtggttttagccgttttatcggttataccacctttatctattagaatctcatctctttcga 192  Q
    |||||||||||||||| ||||||| ||| ||||||| |||||||||||| |||||||||||| |||||    
T  83964 ttgatttgtggttttaaccgttttgtcgattataccgcctttatctattggaatctcatctcgttcga 83897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 40882319 - 40882386
Alignment:
Q  125 ttgatttgtggttttagccgttttatcggttataccacctttatctattagaatctcatctctttcga 192  Q
    |||||||||||||||| ||||||| ||| ||||||| |||||||||||| |||||||||||| |||||    
T  40882319 ttgatttgtggttttaaccgttttgtcgattataccgcctttatctattggaatctcatctcgttcga 40882386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 18605212 - 18605158
Alignment:
Q  86 tgtaaaatatgggctaattcctttgagctctctttgtatttgatttgtggtttta 140  Q
    ||||||| |||||||||| |||||||||||| |||||| ||||||||||||||||    
T  18605212 tgtaaaacatgggctaatccctttgagctctttttgtacttgatttgtggtttta 18605158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 14603 - 14663
Alignment:
Q  125 ttgatttgtggttttagccgttttatcggttataccacctttatctattagaatctcatct 185  Q
    |||||||||||||||||||||| | ||| |||||||  |||||| ||||||||||||||||    
T  14603 ttgatttgtggttttagccgttctgtcgattataccgtctttatttattagaatctcatct 14663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 160
Target Start/End: Complemental strand, 48601376 - 48601334
Alignment:
Q  118 tttgtatttgatttgtggttttagccgttttatcggttatacc 160  Q
    ||||||||||||||||||||||| ||||||||| |||||||||    
T  48601376 tttgtatttgatttgtggttttaaccgttttattggttatacc 48601334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 34492663 - 34492603
Alignment:
Q  129 tttgtggttttagccgttttatcggttataccacctttatctattagaatctcatctcttt 189  Q
    |||||||||||| | ||||| |  |||||||||||||| |||||| |||||||||||||||    
T  34492663 tttgtggttttaacagttttgtaagttataccacctttttctattggaatctcatctcttt 34492603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University