View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17640_low_48 (Length: 247)
Name: NF17640_low_48
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 5696810 - 5697036
Alignment:
| Q |
1 |
atactaaaaacaaattctgggtattttctatgtctggttttacacctctcttaaatttagattattggactaattaaaaggttaatatatttattgttcn |
100 |
Q |
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| T |
5696810 |
atactaaaaacaaattctgggtattttctatgtctggttttacacctctcttaaatttagattattggactaattaaaaggttaatatatttattgttca |
5696909 |
T |
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| Q |
101 |
nnnnnnnnnnnnggttaatatatttacatatatttcatgatgcagttattgccaagacaatacccttgatccaagcaaggtcaaggggaagatagttttg |
200 |
Q |
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| T |
5696910 |
aaaaaaaaaaaaggttaatatatttacatatatttcatgatgcagttattgccaagacaatacccttgatccaagcaaggtcaaggggaagatagttttg |
5697009 |
T |
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| Q |
201 |
tgcatgagaggacaaggtggaagactg |
227 |
Q |
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| T |
5697010 |
tgcatgagaggacaaggtggaagactg |
5697036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 5684771 - 5684863
Alignment:
| Q |
132 |
atttcatgatgcagttattgccaagacaatacccttgatccaagcaaggtcaaggggaagatagttttgtgcatgagaggacaaggtggaaga |
224 |
Q |
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| T |
5684771 |
atttcatgatgcagttattgcctagacaatacccttgatccaagcaaggtcaagggaaaaatagttttgtgcatgagagggcaaggtggaaga |
5684863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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