View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17640_low_5 (Length: 655)
Name: NF17640_low_5
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 9 - 300
Target Start/End: Original strand, 2767908 - 2768203
Alignment:
| Q |
9 |
gattattctaatagaaaatcgaactcgaatagtaccaaagcttaatcaaatttaaccaaagttcatttttaaccacatgagctcaacgagttagttatca |
108 |
Q |
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| T |
2767908 |
gattattctaatagaaaattgaactcgaatagtaccaaagcttaatcaaatttaaccaaagttcatttttaaccacatgagctcaacgagttagttatca |
2768007 |
T |
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| Q |
109 |
aagtatacaaattgaatatatctatcatcacg----caaaaggattagtaaaattgcaagtatatatgtgtattattaatgcatatttccaaaacatttt |
204 |
Q |
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| T |
2768008 |
aagtatacaaattgaatatatctatcatcacgtacgcaaaaggattagtacaattgcaagtatatatgtgtattattaatgcatatttccaaaacatttt |
2768107 |
T |
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| Q |
205 |
tgtaataacaaaaccttctaatttaaaccaactttgttttctagaataacatgtaatatctggtttaatatctagcaataaggtattgcatgaaac |
300 |
Q |
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| T |
2768108 |
tgtaataacaaaaccttataatttaaaccaactttgttttctagaataacatgtaatatctggtttaatatctagcaataaggtattgcatgaaac |
2768203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 363 - 501
Target Start/End: Original strand, 2768288 - 2768426
Alignment:
| Q |
363 |
gaagtagtaatagtgataaacatgaaagaattaaactatcaccttgaagagctgagtaacaagtttaagaagatctttgtgtggttgttctcttgaaaag |
462 |
Q |
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| T |
2768288 |
gaagtagtaatagtgataaacatgaaagaattaaactatcaccttgaagagctgagtaacaagtttaagaagatctttgtgtggttgttctcttgaaaag |
2768387 |
T |
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| Q |
463 |
gagagagttgaaatgaatggcttcacttcaaatgaacac |
501 |
Q |
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| T |
2768388 |
gagagagttgaaatgaatggcttcacttcaaatgaacac |
2768426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 529 - 640
Target Start/End: Original strand, 2768454 - 2768565
Alignment:
| Q |
529 |
gagtgaatattaatttacctcttcaaaaaccgagctttcatgtatagaaaaataaataagcatgtgacttgcactgatactttttcagctctaatttagt |
628 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2768454 |
gagtgaatattaatttacctcttcaaaaaccgagctttcatgtatagaaaaataaataagcatgtgacttgcactgatactttttcagctctaatttagt |
2768553 |
T |
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| Q |
629 |
gatccattaaac |
640 |
Q |
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| T |
2768554 |
gatccattaaac |
2768565 |
T |
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