View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17640_low_53 (Length: 227)
Name: NF17640_low_53
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 4474343 - 4474549
Alignment:
| Q |
1 |
acaatctccacgtcttttatccttagccccgcgaatgtcacaaagattaatgttttgattgccaaggtttccgagacgaataggtatgtaaaatatacga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
4474343 |
acaatctccacgtcttttatccttagccccgcgaatgtcacaaagattaatgttttgattgccaaggtttccgagacgaataggtacgtgaaatatacga |
4474442 |
T |
|
| Q |
101 |
aagggactaaggataagagaattaaagctcttagaatgcttccagcttcgagtgcgacgagcatgtagtatggaaatgcacttcgcgacacgagaagggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4474443 |
aagggactaaggataagagaattaaagctcttagaatgcttccagcttcgagtgcgacgagcatgtagtatggaaatgcacttcgcgacatgagaagggt |
4474542 |
T |
|
| Q |
201 |
gccgtct |
207 |
Q |
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||||||| |
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| T |
4474543 |
gccgtct |
4474549 |
T |
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