View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17640_low_55 (Length: 222)
Name: NF17640_low_55
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 46767699 - 46767547
Alignment:
| Q |
19 |
aaaatcttccttctatactaaaatacaggaacttttgtaaatggtctgcttttagaaacataaattatgagcttatagggtgcttaannnnnnnnnatca |
118 |
Q |
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| T |
46767699 |
aaaatcttccttctatactaaaatacaagaacttttgtaaatgttctgcttttagaagcataaattatgagcttatagggtgcttaa-ttttttttatca |
46767601 |
T |
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| Q |
119 |
ataatatgatcatttaatttcatacgtattcatcttgcagtagcttacttggag |
172 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
46767600 |
ataatatgatcatttaatttcatacgtattcaccttgcagtagcttacttggag |
46767547 |
T |
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