View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17640_low_57 (Length: 215)
Name: NF17640_low_57
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 39404087 - 39404268
Alignment:
| Q |
19 |
aaaaccgaactcaaaaaattattccaatcataacttaaaattcccaaaaatatattgaattgcatggaaagtgggtccatatatttaaacaagtatatat |
118 |
Q |
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| T |
39404087 |
aaaaccgaactcaaaaaattattccaatcataacttaaaattcccaaaaatatattgaattgcatggaaagtgggtccatatatttaaacaagtatatat |
39404186 |
T |
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| Q |
119 |
aactccaagttgctgatggtaaaggagatgaggaaaattaggctggagattgtataagaaaattctaatgtaagagtctgtg |
200 |
Q |
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| T |
39404187 |
aactccaagttgctgatggtaaaggagatgaggaaaattaggctggagattgtataagaaaattctaatgtaagagtctgtg |
39404268 |
T |
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Target: chr7 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 124 - 195
Target Start/End: Original strand, 47757682 - 47757753
Alignment:
| Q |
124 |
caagttgctgatggtaaaggagatgaggaaaattaggctggagattgtataagaaaattctaatgtaagagt |
195 |
Q |
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| T |
47757682 |
caagttgctgatggtaaaggagatgaggcaaattaggctggagattgtatcagcaagttctaatgttagagt |
47757753 |
T |
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