View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17640_low_60 (Length: 206)

Name: NF17640_low_60
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17640_low_60
NF17640_low_60
[»] chr7 (1 HSPs)
chr7 (19-189)||(44212414-44212584)
[»] chr2 (2 HSPs)
chr2 (19-189)||(3933600-3933770)
chr2 (111-189)||(3933791-3933869)
[»] scaffold0061 (2 HSPs)
scaffold0061 (101-175)||(10724-10798)
scaffold0061 (22-81)||(10659-10718)
[»] chr5 (2 HSPs)
chr5 (113-175)||(6376230-6376292)
chr5 (22-81)||(6376310-6376369)
[»] chr8 (2 HSPs)
chr8 (22-81)||(41490026-41490085)
chr8 (100-175)||(41489946-41490021)


Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 44212584 - 44212414
Alignment:
Q  19 gtacacaaattcatgtaaaacaaattcaagcacaaatcataattcacaaccttcaatcacacacaacaatcgcagagcacttaatcacagcatctcaatc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44212584 gtacacaaattcatgtaaaacaaattcaagcacaaatcataattcacaaccttcaatcacacacaacaatcgcagagcacttaatcacagcatctcaatc 44212485  T
Q  119 ccataaccttctcaactatgtttcacctctcttcactcacctcattccaaaaccacatgttttcatcttca 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44212484 ccataaccttctcaactatgtttcacctctcttcactcacctcattccaaaaccacacgttttcatcttca 44212414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 3933600 - 3933770
Alignment:
Q  19 gtacacaaattcatgtaaaacaaattcaagcacaaatcataattcacaaccttcaatcacacacaacaatcgcagagcacttaatcacagcatctcaatc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3933600 gtacacaaattcatgtaaaacaaattcaagcacaaatcataattcacaaccttcaatcacacacaacaatcgcagagcacttaatcacagcatctcaatc 3933699  T
Q  119 ccataaccttctcaactatgtttcacctctcttcactcacctcattccaaaaccacatgttttcatcttca 189  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3933700 ccataaccttctcaactctgtttcacctctcttcactcacctcattccaaaaccacacgttttcatcttca 3933770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 3933791 - 3933869
Alignment:
Q  111 tctcaatcccataaccttctcaactatgtttcacctctcttcactcacctcattccaaaaccacatgttttcatcttca 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3933791 tctcaatcccataaccttctcaactatgtttcacctctcttcactcacctcattccaaaaccacacgttttcatcttca 3933869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 10724 - 10798
Alignment:
Q  101 aatcacagcatctcaatcccataaccttctcaactatgtttcacctctcttcactcacctcattccaaaaccaca 175  Q
    ||||||| ||| |||||| || |||||| | |||||||||||||||||||||||||  ||| |||||||||||||    
T  10724 aatcacatcatgtcaatctcacaaccttttaaactatgtttcacctctcttcactctactcgttccaaaaccaca 10798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 10659 - 10718
Alignment:
Q  22 cacaaattcatgtaaaacaaattcaagcacaaatcataattcacaaccttcaatcacaca 81  Q
    ||||||||||||| |||||  ||||| || |||||||| |||||||||||||||||||||    
T  10659 cacaaattcatgtcaaacaggttcaaacaaaaatcatagttcacaaccttcaatcacaca 10718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 6376292 - 6376230
Alignment:
Q  113 tcaatcccataaccttctcaactatgtttcacctctcttcactcacctcattccaaaaccaca 175  Q
    |||||| || |||| | |||||||||||||||||||||||||||  |||||||||||||||||    
T  6376292 tcaatctcacaaccgtttcaactatgtttcacctctcttcactctactcattccaaaaccaca 6376230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 6376369 - 6376310
Alignment:
Q  22 cacaaattcatgtaaaacaaattcaagcacaaatcataattcacaaccttcaatcacaca 81  Q
    ||||||||||||| ||| |  |||||||| |||||||| |||||||||||||||||||||    
T  6376369 cacaaattcatgtcaaaaaggttcaagcaaaaatcatagttcacaaccttcaatcacaca 6376310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 41490085 - 41490026
Alignment:
Q  22 cacaaattcatgtaaaacaaattcaagcacaaatcataattcacaaccttcaatcacaca 81  Q
    ||||||||||||| |||||  ||||| || |||||||| |||||||||||||||||||||    
T  41490085 cacaaattcatgtcaaacaggttcaaacaaaaatcatagttcacaaccttcaatcacaca 41490026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 41490021 - 41489946
Alignment:
Q  100 taatcacagcatctcaatcccataaccttctcaactatgtttcacctctcttcactcacctcattccaaaaccaca 175  Q
    |||||||| ||| | |||| || |||||| | ||||||| ||||||||||||||| |  |||||||||||||||||    
T  41490021 taatcacatcatgttaatctcacaaccttttaaactatggttcacctctcttcaccctactcattccaaaaccaca 41489946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University