View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17640_low_9 (Length: 501)
Name: NF17640_low_9
Description: NF17640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17640_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 5 - 251
Target Start/End: Complemental strand, 48475437 - 48475191
Alignment:
| Q |
5 |
gttgagaatcgtaccattttgttggattttgaaaagttgctaaatttactgattttggtaagaaaatataggtacatttataagaattttaagatgggat |
104 |
Q |
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| T |
48475437 |
gttgagaatcgtaccattttgttggattttgaaaagttgctaaatttactgattttggtaagaaaatataggtacatttataagaattttaagatgggat |
48475338 |
T |
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| Q |
105 |
ttttcattgaattaccggaaaatataggtaaggttgcaagagcttgaagcttaaaagtgatgaagaagaagaacatgaatttccagattaagaatgatga |
204 |
Q |
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| T |
48475337 |
ttttcattgaattaccggaaaatataggtaaggttgcaagagcttgaagcttaaaagtgatgaagaagaagaacatgaatttccagattaagaatgatga |
48475238 |
T |
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| Q |
205 |
agatgaacatgagttgttaatgattttgattttgatcctttgacaat |
251 |
Q |
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| T |
48475237 |
agatgaacatgaattgttcatgattttgattttcatcctttgacaat |
48475191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 302 - 416
Target Start/End: Complemental strand, 48475142 - 48475028
Alignment:
| Q |
302 |
tggtgagtctcgacctttgcttgcgtggcaatagtcaaagttagttgttcattgtcaagttggtctttttgtgtgacatgtctaaatttaggttttaata |
401 |
Q |
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| T |
48475142 |
tggtgagtctcgacctttgcttgcgtggcaatagtcaaagttagttgttcattgtcaagttggtctttttgtgtgacatgtctaaatttaggttttaata |
48475043 |
T |
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| Q |
402 |
tactaaaactcaaat |
416 |
Q |
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| T |
48475042 |
tactaaaactcaaat |
48475028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 414 - 494
Target Start/End: Complemental strand, 48472756 - 48472677
Alignment:
| Q |
414 |
aatctgcatcaaagcaatacatgagatgtatgtctgtcattgacgctgcgatttacattcctttcatcttattctgtgttg |
494 |
Q |
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| T |
48472756 |
aatctgcatcaa-gcaatacatgatatgtatgtctgtcattgacgctgcgatttacattcctttcatcttattctgtgttg |
48472677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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