View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17641_high_1 (Length: 667)
Name: NF17641_high_1
Description: NF17641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17641_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 615; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 1 - 627
Target Start/End: Original strand, 34859958 - 34860584
Alignment:
| Q |
1 |
aaaacatctagcttcctacgtatgaactccgttggagtaacacacatctggtgagtttcagatatgcacctacacataagagacaatagatcctatggaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34859958 |
aaaacatctagcttcctacgtatgaactccgttggagtaacacacatctggtgagtttcagatatgcacctacacataagcgacaatagatcctatggaa |
34860057 |
T |
|
| Q |
101 |
ttctacgagcatcctcaagtgaagtaacgggaaaagtagcgctatcatcagcacatgagaaggaacctataatcacagtccattccagcttccgaaatat |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860058 |
ttctacgagcatcctcaagtgaagtaacgggaaaagtagcgctatcatcagcacatgagaaggaacctataatcacagtccattccagcttccgaaatat |
34860157 |
T |
|
| Q |
201 |
gatatcagttttaagcatagtctaaatccaatgacttgcaaatatttgattcttgtaatgaatgacattcaatacaacaagtgcaaacaaagttatgtag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860158 |
gatatcagttttaagcatagtctaaatccaatgacttgcaaatatttgattcttgtaatgaatgacattcaatacaacaagtgcaaacaaagttatgtag |
34860257 |
T |
|
| Q |
301 |
tactaggattaaaaaacaaaattggtcctttctgaaggtttacttgcaaattttcttggtggattcatcaccgagagtatttatgcaacagatagagtag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860258 |
tactaggattaaaaaacaaaattggtcctttctgaaggtttacttgcaaattttcttggtggattcatcaccgagagtatttatgcaacagatagagtag |
34860357 |
T |
|
| Q |
401 |
tatttatgtagggaagactgttaaaatagagaaattatccatcatgtcaaggcaagccagctaatatctttagaataggcgactcttacatgccacaata |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34860358 |
tatttatgtagggaagactgttaaaatagagaaattatccatcatgtcaaggcaagccagctaatatctttagaataggtgactcttacatgccacaata |
34860457 |
T |
|
| Q |
501 |
ttcaaattaacaacagaactaactcacagagtaacaaccgagaaaaattccaaataccactctttgaagtctgctttttcagagaagtggtaaaaagatt |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860458 |
ttcaaattaacaacagaactaactcacagagtaacaaccgagaaaaattccaaataccactctttgaagtctgctttttcagagaagtggtaaaaagatt |
34860557 |
T |
|
| Q |
601 |
tgttgtatttaagtagggagatcaatt |
627 |
Q |
| |
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|||||||||| |||||||||||||||| |
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| T |
34860558 |
tgttgtatttgagtagggagatcaatt |
34860584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 541 - 627
Target Start/End: Complemental strand, 2242594 - 2242506
Alignment:
| Q |
541 |
agaaaaattccaaataccactctttgaagt--ctgctttttcagagaagtggtaaaaagatttgttgtatttaagtagggagatcaatt |
627 |
Q |
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|||||| || || ||||||||||||||| | ||||||| | ||||||||||| |||||||| ||||||||| |||| ||||||||||| |
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| T |
2242594 |
agaaaacttgcacataccactctttgaattatctgctttgttagagaagtggtcaaaagattagttgtatttgagtaaggagatcaatt |
2242506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 582 - 621
Target Start/End: Original strand, 5757387 - 5757427
Alignment:
| Q |
582 |
gagaagtggtaaaa-agatttgttgtatttaagtagggaga |
621 |
Q |
| |
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|||||||||||||| ||||||||||||||| |||||||||| |
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| T |
5757387 |
gagaagtggtaaaaaagatttgttgtatttgagtagggaga |
5757427 |
T |
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